Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   M9O79_RS08830 Genome accession   NZ_CP097721
Coordinates   1843308..1844735 (-) Length   475 a.a.
NCBI ID   WP_000980607.1    Uniprot ID   -
Organism   Escherichia coli strain MS1665     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1838308..1849735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9O79_RS08800 (M9O79_08805) yeeZ 1838364..1839188 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  M9O79_RS08805 (M9O79_08810) yeeY 1839234..1840163 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  M9O79_RS08810 (M9O79_08815) yoeI 1840378..1840440 (+) 63 WP_010723108.1 membrane protein YoeI -
  M9O79_RS08815 (M9O79_08820) plaP 1840430..1841788 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  M9O79_RS08820 (M9O79_08825) tsuA 1841967..1843024 (+) 1058 Protein_1728 thiosulfate utilization transporter TsuA/YeeE -
  M9O79_RS08825 (M9O79_08830) tsuB 1843038..1843265 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  M9O79_RS08830 (M9O79_08835) sbcB 1843308..1844735 (-) 1428 WP_000980607.1 exodeoxyribonuclease I Machinery gene
  M9O79_RS08835 (M9O79_08840) dacD 1844944..1846110 (+) 1167 WP_000830169.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  M9O79_RS08840 (M9O79_08845) sbmC 1846229..1846702 (+) 474 WP_001105410.1 DNA gyrase inhibitor SbmC -
  M9O79_RS08845 (M9O79_08850) yeeA 1846900..1847958 (+) 1059 WP_001200891.1 FUSC family protein -
  M9O79_RS08850 (M9O79_08855) tmaR 1848130..1848459 (+) 330 WP_000450409.1 DUF496 family protein -
  M9O79_RS08855 (M9O79_08860) - 1848560..1848736 (-) 177 Protein_1735 EutP/PduV family microcompartment system protein -
  M9O79_RS08860 (M9O79_08865) cobU 1848918..1849463 (+) 546 WP_001297352.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54458.73 Da        Isoelectric Point: 5.4700

>NTDB_id=596265 M9O79_RS08830 WP_000980607.1 1843308..1844735(-) (sbcB) [Escherichia coli strain MS1665]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=596265 M9O79_RS08830 WP_000980607.1 1843308..1844735(-) (sbcB) [Escherichia coli strain MS1665]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCTGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583