Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   M9O74_RS09640 Genome accession   NZ_CP097719
Coordinates   2010096..2011523 (-) Length   475 a.a.
NCBI ID   WP_072132999.1    Uniprot ID   -
Organism   Escherichia coli strain MS1679     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2005096..2016523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9O74_RS09610 (M9O74_09605) yeeZ 2005151..2005975 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  M9O74_RS09615 (M9O74_09610) yeeY 2006021..2006950 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  M9O74_RS09620 (M9O74_09615) yoeI 2007165..2007227 (+) 63 WP_010723108.1 membrane protein YoeI -
  M9O74_RS09625 (M9O74_09620) plaP 2007217..2008575 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  M9O74_RS09630 (M9O74_09625) tsuA 2008754..2009812 (+) 1059 WP_000492312.1 thiosulfate utilization transporter TsuA/YeeE -
  M9O74_RS09635 (M9O74_09630) tsuB 2009826..2010053 (+) 228 WP_000985278.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  M9O74_RS09640 (M9O74_09635) sbcB 2010096..2011523 (-) 1428 WP_072132999.1 exodeoxyribonuclease I Machinery gene
  M9O74_RS09645 (M9O74_09640) dacD 2011732..2012898 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  M9O74_RS09650 (M9O74_09645) sbmC 2013017..2013490 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  M9O74_RS09655 (M9O74_09650) yeeA 2013688..2014746 (+) 1059 WP_001200891.1 FUSC family protein -
  M9O74_RS09660 (M9O74_09655) tmaR 2014918..2015247 (+) 330 WP_000450409.1 DUF496 family protein -
  M9O74_RS26500 - 2015348..2015530 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  M9O74_RS26660 - 2015602..2015730 (+) 129 Protein_1896 transposase domain-containing protein -
  M9O74_RS09675 (M9O74_09670) - 2016019..2016111 (-) 93 Protein_1897 DUF957 domain-containing protein -
  M9O74_RS09680 (M9O74_09675) yeeW 2016145..2016339 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54485.76 Da        Isoelectric Point: 5.4720

>NTDB_id=596185 M9O74_RS09640 WP_072132999.1 2010096..2011523(-) (sbcB) [Escherichia coli strain MS1679]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=596185 M9O74_RS09640 WP_072132999.1 2010096..2011523(-) (sbcB) [Escherichia coli strain MS1679]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581