Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K4732_RS17745 Genome accession   NZ_CP081342
Coordinates   3826315..3827697 (-) Length   460 a.a.
NCBI ID   WP_221611297.1    Uniprot ID   -
Organism   Pantoea ananatis strain TZ39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3821315..3832697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4732_RS17720 (K4732_17720) - 3821755..3822444 (-) 690 WP_028724608.1 molecular chaperone -
  K4732_RS17725 (K4732_17725) - 3822484..3823038 (-) 555 WP_110956816.1 fimbrial protein -
  K4732_RS17730 (K4732_17730) - 3823280..3823729 (-) 450 WP_206115358.1 hypothetical protein -
  K4732_RS17735 (K4732_17735) - 3823726..3824658 (-) 933 WP_221611296.1 winged helix-turn-helix domain-containing protein -
  K4732_RS17740 (K4732_17740) nadR 3824984..3826222 (-) 1239 WP_028724604.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  K4732_RS17745 (K4732_17745) radA 3826315..3827697 (-) 1383 WP_221611297.1 DNA repair protein RadA Machinery gene
  K4732_RS17750 (K4732_17750) serB 3827711..3828688 (-) 978 WP_014595282.1 phosphoserine phosphatase -
  K4732_RS17755 (K4732_17755) - 3828796..3829464 (+) 669 WP_028724602.1 YtjB family periplasmic protein -
  K4732_RS17760 (K4732_17760) yjjG 3829593..3830273 (-) 681 WP_221611298.1 pyrimidine 5'-nucleotidase -
  K4732_RS17765 (K4732_17765) rimI 3830293..3830733 (-) 441 WP_221611299.1 ribosomal protein S18-alanine N-acetyltransferase -
  K4732_RS17770 (K4732_17770) - 3830705..3831115 (-) 411 WP_028724599.1 DNA polymerase III subunit psi -
  K4732_RS17775 (K4732_17775) rsmC 3831221..3832252 (+) 1032 WP_047715048.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49384.05 Da        Isoelectric Point: 7.4038

>NTDB_id=596004 K4732_RS17745 WP_221611297.1 3826315..3827697(-) (radA) [Pantoea ananatis strain TZ39]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQVMCRLAQTMKTLYVTGEESLQQVAMRAHRLGLPTENLNMLSETSIE
QICLIAEQEAPQIMVIDSIQVMHMADIQSSPGSVAQVRETAAYLTRFAKTCGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEITSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERISEAAKHGFKRAIVPAGNAPKKPIEGMRVYSAKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=596004 K4732_RS17745 WP_221611297.1 3826315..3827697(-) (radA) [Pantoea ananatis strain TZ39]
TTGGCCAAAGCGGCAAAACGCGCATTTGTTTGTAACGAGTGTGGCGCAGATTATCCGCGCTGGCAGGGGCAATGCAGCGC
CTGTCACGCCTGGAACACCATTACCGAGGTACGGATTGCCGCCTCACCCGCTGCAGCGCGCAATGAGCGCCTCAGCGGTT
ATGCGGGCAGTGCCGGGACCAGTCGGGTGCAAAAGCTGTCCGAAATCAGTCTGGAAGCCTTGCCCCGTTTCTCGACCAGC
TTTAAAGAATTTGACCGTGTGCTGGGCGGTGGCGTGGTGCCCGGCAGTGCCATTCTGATTGGTGGTAATCCCGGGGCCGG
TAAATCCACTTTGTTGCTGCAGGTCATGTGCCGCTTAGCGCAGACCATGAAAACCCTGTATGTCACCGGCGAAGAATCCT
TACAGCAGGTGGCAATGCGCGCCCATCGGCTGGGTTTGCCGACTGAAAACCTCAACATGCTGTCGGAAACCAGCATCGAA
CAGATCTGTCTGATCGCTGAGCAGGAAGCGCCGCAAATCATGGTCATCGACTCCATCCAGGTGATGCACATGGCTGATAT
CCAGTCTTCACCCGGCAGCGTGGCCCAGGTGCGAGAAACCGCCGCTTATCTGACGCGCTTTGCCAAAACCTGCGGCGTGG
CGATTATCATGGTGGGCCACGTCACCAAAGACGGATCGCTGGCCGGGCCGAAGGTCCTTGAGCACTGTATTGACTGTTCG
GTGCTGCTGGATGGCGATGCCGATTCGCGCTTCCGCACCTTGCGCAGCCATAAAAACCGTTTTGGTGCCGTGAATGAACT
GGGGGTTTTTGCCATGACGGAGCAGGGCATGCGTGAGGTGAGCAATCCTTCGGCCATTTTCCTGTCGCGCGGTGAAGAGA
TTACATCGGGCAGTTCGGTCATGGTCCTGTGGGAAGGAACCCGGCCGTTGCTGGTCGAGATTCAGGCGCTGGTGGACCAT
TCGATGATGGGGAATCCCCGACGTGTTGCCGTTGGGCTTGAACAAAACCGCCTGGCGATTCTGCTGGCGGTACTGCATCG
TCACGGTGGATTGCAAATGGCGGATCAGGATGTGTTCGTCAACGTCGTGGGCGGCGTGAAAGTTACAGAAACCAGCGCCG
ACCTGGCGCTGATGCTGTCAATGGTTTCCAGCCTGCGCGATCGCCCCTTGCCGCAGGATCTGGTTATCTTTGGCGAAGTC
GGGCTGGCCGGCGAAATTCGTCCGGTACCCAGCGGTCAGGAACGGATCTCAGAAGCGGCGAAACATGGCTTCAAACGGGC
GATTGTGCCTGCGGGTAACGCGCCGAAAAAGCCGATTGAGGGCATGCGCGTCTACAGCGCGAAAAAGCTGGCGGATGCGC
TGGCGATTCTCGATGATCTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(87-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.59

100

0.487
  radA Streptococcus mitis NCTC 12261

43.516

98.913

0.43
  radA Streptococcus mitis SK321

44.78

93.696

0.42
  radA Streptococcus pneumoniae Rx1

44.78

93.696

0.42
  radA Streptococcus pneumoniae D39

44.78

93.696

0.42
  radA Streptococcus pneumoniae R6

44.78

93.696

0.42
  radA Streptococcus pneumoniae TIGR4

44.78

93.696

0.42