Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   Cf24236_RS08940 Genome accession   NZ_CP081314
Coordinates   1903903..1904532 (+) Length   209 a.a.
NCBI ID   WP_195296990.1    Uniprot ID   -
Organism   Citrobacter farmeri strain CCRI-24236     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1898903..1909532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Cf24236_RS08920 (Cf24236_1776) - 1899288..1901048 (-) 1761 WP_216525594.1 AAA family ATPase -
  Cf24236_RS08925 (Cf24236_1777) matP 1901234..1901686 (+) 453 WP_222563805.1 macrodomain Ter protein MatP -
  Cf24236_RS08930 (Cf24236_1778) ompA 1901765..1902820 (-) 1056 WP_195296988.1 porin OmpA -
  Cf24236_RS08935 (Cf24236_1779) sulA 1903176..1903685 (-) 510 WP_195296989.1 SOS-induced cell division inhibitor SulA -
  Cf24236_RS08940 (Cf24236_1780) sxy/tfoX 1903903..1904532 (+) 630 WP_195296990.1 TfoX/Sxy family DNA transformation protein Regulator
  Cf24236_RS08945 (Cf24236_1781) yccS 1904486..1906648 (-) 2163 WP_216526515.1 YccS family putative transporter -
  Cf24236_RS08950 (Cf24236_1782) - 1906655..1907113 (-) 459 WP_195296992.1 YccF domain-containing protein -
  Cf24236_RS08955 (Cf24236_1783) helD 1907237..1909291 (+) 2055 WP_222563806.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24206.15 Da        Isoelectric Point: 9.4620

>NTDB_id=595969 Cf24236_RS08940 WP_195296990.1 1903903..1904532(+) (sxy/tfoX) [Citrobacter farmeri strain CCRI-24236]
MKLHSYDRIYKSQEYLSSLGTIHFRSLFGSYSLTIKNTVFAMVANGELYLRACEQSVQYCVQHSPVWLTFLKRGRPVMLN
YYQVDDSLWRDQQQLIQLSKFSLNAALQEKLTRCSQQRLKDLPNMTFHLESLLNDAGIYDVATLRMLGAKMCWLRLRQLN
KSITDKILFNLEGAIYGIHEAALPATRRQELALWVKSLSPTPVLPEKIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=595969 Cf24236_RS08940 WP_195296990.1 1903903..1904532(+) (sxy/tfoX) [Citrobacter farmeri strain CCRI-24236]
ATGAAATTACACTCCTATGACAGGATCTATAAATCACAGGAATATTTATCTTCTCTGGGGACGATCCATTTCCGTTCACT
GTTCGGCAGCTACAGCCTGACTATCAAGAATACCGTCTTTGCGATGGTCGCGAATGGTGAGCTTTATCTGCGTGCCTGTG
AGCAAAGCGTACAGTATTGTGTGCAGCACTCTCCGGTATGGCTGACATTTCTTAAACGCGGGCGTCCGGTCATGCTCAAC
TATTACCAGGTTGATGACAGCCTGTGGCGCGACCAGCAGCAGTTGATCCAGTTATCGAAGTTTTCACTGAATGCCGCGTT
GCAGGAGAAATTGACCCGCTGTTCTCAGCAGCGGCTGAAGGATCTTCCCAATATGACCTTTCATCTGGAGAGTTTATTGA
ATGACGCGGGGATCTATGACGTCGCCACCCTGAGAATGCTGGGGGCCAAAATGTGCTGGTTGCGACTTCGACAGCTTAAC
AAGTCCATCACCGACAAGATTCTGTTTAATCTTGAAGGCGCCATTTATGGCATTCATGAAGCGGCACTCCCGGCGACACG
CCGCCAGGAGCTCGCTTTGTGGGTTAAGTCGCTTTCACCGACGCCGGTGTTGCCGGAGAAGATTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.9

100

0.689