Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K5A55_RS14590 Genome accession   NZ_CP081306
Coordinates   2992675..2993304 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Ec1079     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2987675..2998304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5A55_RS14575 (K5A55_14575) helD 2987917..2989971 (-) 2055 WP_000420536.1 DNA helicase IV -
  K5A55_RS14580 (K5A55_14580) yccF 2990094..2990540 (+) 447 WP_001261235.1 YccF domain-containing protein -
  K5A55_RS14585 (K5A55_14585) yccS 2990550..2992712 (+) 2163 WP_000875023.1 YccS family putative transporter -
  K5A55_RS14590 (K5A55_14590) sxy/tfoX 2992675..2993304 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  K5A55_RS14595 (K5A55_14595) sulA 2993523..2994032 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  K5A55_RS14600 (K5A55_14600) ompA 2994389..2995441 (+) 1053 WP_001361736.1 porin OmpA -
  K5A55_RS14605 (K5A55_14605) matP 2995517..2995969 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  K5A55_RS14610 (K5A55_14610) ycbZ 2996155..2997915 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=595954 K5A55_RS14590 WP_000839153.1 2992675..2993304(-) (sxy/tfoX) [Escherichia coli strain Ec1079]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=595954 K5A55_RS14590 WP_000839153.1 2992675..2993304(-) (sxy/tfoX) [Escherichia coli strain Ec1079]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1