Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LOCK900_RS01235 Genome accession   NC_021723
Coordinates   263134..264933 (-) Length   599 a.a.
NCBI ID   WP_005714370.1    Uniprot ID   -
Organism   Lacticaseibacillus rhamnosus LOCK900     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 258134..269933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOCK900_RS01210 (LOCK900_0263) - 259271..259615 (+) 345 WP_005694534.1 hypothetical protein -
  LOCK900_RS01215 (LOCK900_0264) - 259782..260501 (+) 720 WP_005685357.1 metal ABC transporter ATP-binding protein -
  LOCK900_RS01220 (LOCK900_0265) - 260498..261295 (+) 798 WP_005685358.1 metal ABC transporter permease -
  LOCK900_RS01225 (LOCK900_0266) - 261411..262259 (-) 849 WP_005714368.1 metallophosphoesterase -
  LOCK900_RS01230 (LOCK900_0267) - 262256..263137 (-) 882 WP_005710663.1 NAD(P)-dependent oxidoreductase -
  LOCK900_RS01235 (LOCK900_0268) pepF 263134..264933 (-) 1800 WP_005714370.1 oligoendopeptidase F Regulator
  LOCK900_RS01240 (LOCK900_0269) - 265062..266156 (+) 1095 WP_005685362.1 LCP family protein -
  LOCK900_RS01245 (LOCK900_0271) brnQ 266265..267644 (-) 1380 WP_005685364.1 branched-chain amino acid transport system II carrier protein -
  LOCK900_RS01250 (LOCK900_0272) - 268297..268986 (-) 690 WP_005710655.1 hydrolase -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67245.19 Da        Isoelectric Point: 5.5357

>NTDB_id=59590 LOCK900_RS01235 WP_005714370.1 263134..264933(-) (pepF) [Lacticaseibacillus rhamnosus LOCK900]
MQHLPAREDVPTQLTWDLTTIYPDDSAWETDFKAVRAQAKAAVALKGTLGNSADALVTGIKAVLAVFRRFEKVYVYSSLK
SDQDTGNATYQAMNAKAESLGAELASQLAFLDPEILAIPSDKLTAWRDTESLKPFGHFIDAITVNREHVLTTAAEALIAS
AGDALNASHATFNVLNNSDLQFGFVENEDGETVQLSNGLYGQLIRSTNRKLRKEAFEALLRAYESLKNTFAQTLSGQVKA
HNFNATAHHYKNARAAAMASNHIPESVYTTLIDQVNTHLPLLHRYVALRKKVLAVDQLHMYDIYTPLTGQPPLTYKLEQA
KAEALKALAPLGDDYLEHVREIFDNRYIDVVENKGKRSGAYSGGAYDTNPFILLNWHDAVDELHTLVHETGHSVHSWYTR
HNQPYVYGDYPIFVAEIASTTNENLLTDYFLTHSDDPKVRAYILNYYLDGFKGTVFRQTQFAEFEHWIHQQDQQGEPLTD
TSMSQYYADLNARYYGPEVARDPEIAFEWARIPHFYYNYYVYQYATGFAAASTLAAGISSGEPDAAARYLDYLKSGSSKY
AIDTMKTAGVDMTKPDYLEAAFSVFEQRLTELEKILQKG

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=59590 LOCK900_RS01235 WP_005714370.1 263134..264933(-) (pepF) [Lacticaseibacillus rhamnosus LOCK900]
ATGCAACATTTACCAGCACGAGAGGATGTCCCAACGCAATTGACCTGGGACCTGACAACGATTTATCCAGATGATTCAGC
TTGGGAAACCGACTTTAAAGCTGTCCGTGCCCAAGCCAAAGCGGCCGTCGCATTGAAAGGAACGTTAGGCAACTCGGCAG
ACGCCCTTGTTACCGGCATTAAAGCCGTACTTGCAGTTTTTCGACGCTTCGAGAAGGTTTACGTCTATTCAAGTTTAAAA
AGCGATCAAGATACCGGTAACGCCACTTATCAGGCGATGAATGCCAAAGCTGAAAGCCTGGGTGCTGAATTAGCCAGTCA
GTTAGCTTTTTTGGATCCGGAAATTCTGGCGATCCCAAGCGACAAATTAACGGCCTGGCGTGACACTGAAAGCTTGAAAC
CATTCGGACATTTTATTGATGCCATCACGGTAAATCGAGAACACGTCTTGACAACCGCTGCCGAGGCCTTGATTGCAAGT
GCGGGTGATGCCTTAAATGCCAGTCATGCGACCTTCAATGTATTAAACAACTCTGATCTGCAATTCGGGTTTGTTGAAAA
TGAAGATGGCGAAACCGTCCAGCTTAGTAACGGTTTGTACGGTCAATTGATTCGCTCAACTAATCGTAAATTACGCAAGG
AGGCTTTCGAGGCCCTTCTGCGTGCTTACGAAAGTTTGAAAAATACGTTTGCGCAAACGTTAAGTGGTCAAGTGAAAGCC
CATAATTTCAACGCGACGGCGCATCATTACAAAAATGCGCGTGCTGCCGCTATGGCAAGTAATCACATTCCGGAAAGTGT
GTACACGACGCTTATCGACCAGGTTAACACCCACCTGCCACTTTTACATCGTTATGTCGCCTTGCGTAAAAAGGTGTTGG
CAGTCGATCAGTTACACATGTATGACATTTACACACCACTGACTGGCCAGCCGCCGTTGACTTATAAGCTTGAACAAGCC
AAAGCAGAGGCCTTAAAAGCTTTAGCCCCACTAGGCGATGATTATCTTGAGCATGTTCGCGAAATTTTTGACAATCGCTA
TATTGATGTTGTCGAGAATAAAGGCAAACGTTCAGGCGCCTATTCCGGTGGTGCTTATGACACCAATCCGTTCATCTTAT
TGAACTGGCACGATGCCGTTGATGAACTCCATACGTTGGTTCACGAAACCGGCCACAGCGTCCACAGTTGGTACACGCGT
CACAATCAGCCGTATGTCTATGGTGATTATCCGATCTTTGTTGCCGAAATTGCTTCAACGACCAACGAAAACCTGTTAAC
TGATTATTTCCTGACACATTCGGATGATCCCAAAGTACGAGCCTACATTTTGAATTACTATCTCGATGGTTTTAAGGGAA
CTGTTTTCCGTCAGACACAATTTGCCGAGTTCGAGCACTGGATTCACCAACAGGATCAGCAAGGCGAACCGTTAACGGAC
ACCAGCATGTCACAATATTACGCCGATCTCAATGCCCGGTATTATGGACCGGAAGTTGCACGCGATCCGGAAATTGCTTT
TGAATGGGCCCGCATTCCGCACTTCTACTACAATTACTATGTTTACCAGTATGCAACCGGCTTTGCTGCTGCCTCAACCT
TAGCAGCGGGCATCAGTAGCGGTGAACCTGACGCGGCTGCCCGGTACTTAGACTATTTGAAGTCAGGGAGTTCTAAGTAT
GCCATTGACACCATGAAAACAGCTGGCGTTGATATGACCAAACCCGATTATCTTGAAGCCGCCTTTTCAGTATTTGAACA
GCGCTTGACGGAATTGGAAAAAATCTTGCAGAAAGGATGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-582)

Oligopeptidase F (Peptidase_M3_N)

(114-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.941

99.332

0.526

Multiple sequence alignment