Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   K4L72_RS01780 Genome accession   NZ_CP081304
Coordinates   359614..360051 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain CL-4     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 354614..365051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4L72_RS20135 - 355194..355358 (-) 165 Protein_304 molybdopterin dinucleotide binding domain-containing protein -
  K4L72_RS01745 (K4L72_01745) - 355472..356674 (+) 1203 WP_057080005.1 GTP-binding protein -
  K4L72_RS01750 (K4L72_01750) - 356739..357875 (+) 1137 WP_069013092.1 zinc-dependent alcohol dehydrogenase -
  K4L72_RS01755 (K4L72_01755) - 357890..358324 (+) 435 WP_057080003.1 RDD family protein -
  K4L72_RS01760 (K4L72_01760) - 358441..358716 (+) 276 WP_369719109.1 YckD family protein -
  K4L72_RS20415 (K4L72_01765) - 358820..358936 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  K4L72_RS01770 (K4L72_01770) - 358935..359153 (+) 219 Protein_310 family 1 glycosylhydrolase -
  K4L72_RS01775 (K4L72_01775) nin/comJ 359194..359592 (-) 399 WP_014304317.1 competence protein ComJ Regulator
  K4L72_RS01780 (K4L72_01780) nucA/comI 359614..360051 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  K4L72_RS01785 (K4L72_01785) hxlB 360410..360967 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  K4L72_RS01790 (K4L72_01790) hxlA 360964..361599 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  K4L72_RS01795 (K4L72_01795) - 361831..362193 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=595873 K4L72_RS01780 WP_003156588.1 359614..360051(-) (nucA/comI) [Bacillus velezensis strain CL-4]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=595873 K4L72_RS01780 WP_003156588.1 359614..360051(-) (nucA/comI) [Bacillus velezensis strain CL-4]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641