Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   K2F33_RS05225 Genome accession   NZ_CP081301
Coordinates   1050321..1051280 (-) Length   319 a.a.
NCBI ID   WP_089549636.1    Uniprot ID   -
Organism   Paenibacillus sp. PSB04     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1045321..1056280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K2F33_RS05205 (K2F33_05185) - 1046836..1047174 (+) 339 WP_263881172.1 hypothetical protein -
  K2F33_RS05210 (K2F33_05190) - 1047400..1048377 (-) 978 WP_244879487.1 siderophore ABC transporter substrate-binding protein -
  K2F33_RS05215 (K2F33_05195) - 1048613..1049371 (-) 759 WP_089549638.1 ABC transporter ATP-binding protein -
  K2F33_RS05220 (K2F33_05200) - 1049368..1050324 (-) 957 WP_076171982.1 iron chelate uptake ABC transporter family permease subunit -
  K2F33_RS05225 (K2F33_05205) ceuB 1050321..1051280 (-) 960 WP_089549636.1 ABC transporter permease Machinery gene
  K2F33_RS05230 (K2F33_05210) - 1051549..1051677 (+) 129 WP_076171988.1 DUF4023 family protein -
  K2F33_RS05235 (K2F33_05215) - 1051985..1052611 (+) 627 WP_076171991.1 DedA family protein -
  K2F33_RS05240 (K2F33_05220) - 1052758..1053576 (-) 819 WP_089549635.1 carbohydrate ABC transporter permease -
  K2F33_RS05245 (K2F33_05225) - 1053576..1054442 (-) 867 WP_089549634.1 carbohydrate ABC transporter permease -
  K2F33_RS05250 (K2F33_05230) - 1054472..1055695 (-) 1224 WP_263881173.1 ABC transporter substrate-binding protein -
  K2F33_RS05255 (K2F33_05235) - 1055888..1056265 (-) 378 WP_076172002.1 c-type cytochrome -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 35312.78 Da        Isoelectric Point: 10.1299

>NTDB_id=595837 K2F33_RS05225 WP_089549636.1 1050321..1051280(-) (ceuB) [Paenibacillus sp. PSB04]
MKNTYLWTLWILLIVFSAASLFIGVKDISPLDLFHLTAEQKQVLWISRLPRLISIIIAGTSMSIIGLIMQQLTRNKFVSP
TTAGTMDSARFGILVALMVFGNAAPLVKMLVAFVFALLGTMIFMRILDKVKYKDAIFIPLVGLMFGNIVSSVTTFFAYKN
DLIQNMSSWLQGDFSMILKGRYEMLYISIPLLIIAYLFANRFTIAGMGEEFAVNLGLNYKAVVNIGLVIVAAISSVVILT
VGMIPFLGLVVPNIVTMYLGDHLKKSLLHTALLGAVFVLFCDILGRVIIFPYEISIGVTVGVIGSAIFIYLLLRRRAYT

Nucleotide


Download         Length: 960 bp        

>NTDB_id=595837 K2F33_RS05225 WP_089549636.1 1050321..1051280(-) (ceuB) [Paenibacillus sp. PSB04]
ATGAAAAACACTTACCTGTGGACGCTGTGGATCCTGCTTATCGTATTCTCAGCCGCTTCTTTGTTTATCGGGGTGAAGGA
TATTTCCCCGCTGGATCTGTTTCATCTCACAGCCGAACAGAAGCAGGTGCTCTGGATCAGCCGCCTGCCGCGCCTGATCA
GCATTATCATTGCCGGCACGAGCATGAGCATTATCGGCCTGATCATGCAGCAGCTGACGAGAAACAAGTTCGTGTCGCCG
ACGACGGCCGGAACGATGGACTCGGCAAGGTTCGGCATTTTGGTGGCCCTCATGGTGTTTGGTAACGCGGCGCCGCTGGT
GAAAATGCTGGTGGCCTTCGTTTTTGCCCTGCTGGGAACGATGATCTTTATGCGGATCCTGGATAAGGTCAAATACAAGG
ACGCAATTTTCATTCCGCTTGTCGGACTCATGTTCGGCAACATTGTCAGCTCGGTCACGACGTTTTTTGCCTATAAAAAC
GATCTGATCCAGAACATGTCCTCCTGGCTGCAGGGCGATTTTTCCATGATCCTCAAAGGCCGATACGAGATGCTGTACAT
CAGCATTCCGCTCCTGATCATCGCCTATCTGTTCGCGAACCGCTTTACAATTGCGGGCATGGGGGAGGAGTTCGCGGTGA
ACTTGGGGCTTAACTATAAGGCCGTCGTCAATATCGGACTGGTCATCGTCGCCGCTATTTCATCGGTCGTGATTTTAACC
GTGGGCATGATTCCTTTTCTGGGCCTGGTCGTTCCGAACATCGTCACGATGTATCTGGGGGATCATCTGAAAAAAAGCCT
GCTACATACCGCACTACTGGGAGCTGTGTTCGTTCTGTTCTGCGACATTCTGGGCCGGGTCATCATCTTTCCGTATGAAA
TCTCCATCGGCGTCACTGTCGGGGTGATTGGCAGCGCGATCTTTATCTATTTACTGCTGAGAAGAAGGGCTTATACATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(12-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.459

98.433

0.536