Detailed information NTG0595833

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: K2F33_RS03985
• Genome accession: NZ_CP081301
• Coordinates: 742916..744283 (-)
• Length: 455 a.a.
• NCBI ID: WP_089549786.1
• Uniprot ID: -
• Organism: Paenibacillus sp. PSB04
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 737916..749283

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K2F33_RS03955 (K2F33_03935)	ispF	737984..738472 (-)	489	WP_105441910.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K2F33_RS03960 (K2F33_03940)	ispD	738469..739179 (-)	711	WP_412973993.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
K2F33_RS03965 (K2F33_03945)	-	739234..740310 (-)	1077	WP_076176711.1	PIN/TRAM domain-containing protein	-
K2F33_RS03970 (K2F33_03950)	-	740538..740933 (+)	396	WP_076176710.1	DUF1573 domain-containing protein	-
K2F33_RS03975 (K2F33_03955)	pssA	741040..741771 (-)	732	WP_076176709.1	CDP-diacylglycerol--serine O-phosphatidyltransferase	-
K2F33_RS03980 (K2F33_03960)	disA	741826..742902 (-)	1077	WP_076176708.1	DNA integrity scanning diadenylate cyclase DisA	-
K2F33_RS03985 (K2F33_03965)	radA	742916..744283 (-)	1368	WP_089549786.1	DNA repair protein RadA	Machinery gene
K2F33_RS03990 (K2F33_03970)	clpC	744511..746961 (-)	2451	WP_076176706.1	ATP-dependent protease ATP-binding subunit ClpC	-
K2F33_RS03995 (K2F33_03975)	-	747039..748097 (-)	1059	WP_116234482.1	protein arginine kinase	-
K2F33_RS04000 (K2F33_03980)	-	748126..748650 (-)	525	WP_263881029.1	UvrB/UvrC motif-containing protein	-
K2F33_RS04005 (K2F33_03985)	-	748680..749141 (-)	462	WP_076176703.1	CtsR family transcriptional regulator	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 49502.32 Da
• Isoelectric Point: 6.8171

>NTDB_id=595833 K2F33_RS03985 WP_089549786.1 742916..744283(-) (radA) [Paenibacillus sp. PSB04]
MAKSKTKFYCTECGYEAAKWYGKCPGCQAWNSMVEETESIIKTQGMNSPLFHSKEKPLSIINIESSQEARVLTGIGELNR
VLGGGIVPGSLILVGGDPGIGKSTLLLQTSHALTQSGLRVLYVSGEESVRQTKLRADRLGALSPELYVLCETNMDLIEEA
IESVKPQFLVIDSIQTVYIPEVTSAPGSVAQVRECTARFMRVAKGLGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMNEVGLVEVGNPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALISSTHFPS
PRRMCTGIDHHRMGLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDIPTKPYDVMFGEVGLTGE
VRGVSRVEQRVREAEKLGFKRIILPEKSLKGWRHPKGIEIIGVSTVADALAVALD

Nucleotide

• Length: 1368 bp

>NTDB_id=595833 K2F33_RS03985 WP_089549786.1 742916..744283(-) (radA) [Paenibacillus sp. PSB04]
ATGGCCAAATCGAAAACGAAATTTTACTGTACCGAGTGCGGCTATGAAGCTGCCAAGTGGTACGGAAAGTGTCCGGGCTG
CCAGGCCTGGAACTCGATGGTAGAAGAAACGGAAAGCATCATCAAGACGCAGGGGATGAATTCCCCGCTTTTTCATAGTA
AAGAAAAGCCGCTTTCGATCATAAATATAGAGAGCAGCCAGGAAGCAAGGGTGCTGACCGGGATCGGCGAGCTCAACCGC
GTTCTGGGCGGCGGGATCGTTCCCGGATCGCTCATTCTTGTCGGGGGCGACCCGGGCATCGGCAAGTCGACCCTGCTCCT
GCAAACGTCGCACGCCCTGACGCAGTCCGGCCTGCGCGTGCTGTACGTGTCCGGTGAGGAATCGGTCCGTCAGACCAAGC
TCCGGGCGGATCGCCTCGGTGCCCTCTCGCCGGAACTGTACGTTCTGTGCGAGACGAATATGGATCTGATCGAAGAGGCG
ATCGAGAGTGTAAAGCCTCAGTTTCTGGTGATCGACTCCATCCAGACGGTCTACATTCCCGAGGTGACCAGCGCGCCGGG
AAGCGTGGCGCAGGTCCGGGAATGTACGGCCCGGTTTATGCGGGTAGCCAAAGGGCTCGGCATCGCCACCGTCCTTGTGG
GGCATGTTACAAAGGAAGGGGCCATCGCCGGACCGAGGCTGCTGGAGCATATGGTGGACTGTGTGCTTTATTTTGAAGGC
GAGCGTCATCATACCTACCGGCTGTTAAGAGCCGTTAAGAACCGCTTTGGATCGACAAATGAGATCGGCATTTTTGAGAT
GAACGAGGTCGGGTTGGTCGAGGTGGGAAACCCGTCGGAGCTGTTTCTGTCCGAGCGCCCGCTCGGCGTGGCGGGGTCCA
CGGTCGTGGCCAGCATGGAGGGCACCAGACCCGTCCTGGTCGAACTTCAGGCCTTGATCTCTTCCACGCATTTTCCGTCA
CCCCGGCGCATGTGCACCGGGATCGACCATCACCGGATGGGACTGATCATTGCGGTGCTGGAGAAGCGGATGGGCATGTT
CCTGCAGAATCAGGATGCGTACCTGAACGTGGCGGGGGGCGTCAAGCTGGACGAACCGGCGGTTGATCTGGCCATCGCCG
TCAGCATCGCCTCCAGCTTTCGGGATATTCCGACAAAGCCGTATGACGTCATGTTCGGCGAAGTCGGCCTGACCGGCGAA
GTCCGGGGCGTCTCCCGTGTGGAACAGCGCGTCCGGGAAGCGGAGAAGCTGGGGTTCAAGCGGATTATTTTACCGGAGAA
AAGTTTGAAAGGATGGAGGCACCCCAAAGGTATTGAAATCATCGGAGTGAGTACCGTTGCAGATGCACTAGCGGTCGCGT
TAGATTAG

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (348-427)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (64-220)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	67.32	100	0.679
radA	Streptococcus pneumoniae Rx1	58.667	98.901	0.58
radA	Streptococcus pneumoniae D39	58.667	98.901	0.58
radA	Streptococcus pneumoniae R6	58.667	98.901	0.58
radA	Streptococcus pneumoniae TIGR4	58.667	98.901	0.58
radA	Streptococcus mitis NCTC 12261	58.667	98.901	0.58
radA	Streptococcus mitis SK321	58.444	98.901	0.578