Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KZC02_RS10860 Genome accession   NZ_CP081299
Coordinates   2703122..2704495 (-) Length   457 a.a.
NCBI ID   WP_221394127.1    Uniprot ID   -
Organism   Dyadobacter sp. NIV53     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2698122..2709495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZC02_RS10830 ychF 2698580..2699679 (-) 1100 Protein_2208 redox-regulated ATPase YchF -
  KZC02_RS10835 - 2699842..2700192 (-) 351 WP_221394122.1 DUF3276 family protein -
  KZC02_RS10840 - 2700435..2700887 (+) 453 WP_221394123.1 septal ring lytic transglycosylase RlpA family protein -
  KZC02_RS10845 - 2700908..2701822 (+) 915 WP_221394124.1 DUF58 domain-containing protein -
  KZC02_RS10850 - 2701871..2702719 (+) 849 WP_221394125.1 hypothetical protein -
  KZC02_RS10855 - 2702773..2703018 (+) 246 WP_221394126.1 hypothetical protein -
  KZC02_RS10860 radA 2703122..2704495 (-) 1374 WP_221394127.1 DNA repair protein RadA Machinery gene
  KZC02_RS10865 - 2704687..2705379 (+) 693 WP_229254172.1 porin family protein -
  KZC02_RS10870 - 2705525..2705923 (-) 399 WP_229254173.1 LytTR family DNA-binding domain-containing protein -
  KZC02_RS10875 pheS 2706305..2707345 (+) 1041 WP_221394128.1 phenylalanine--tRNA ligase subunit alpha -
  KZC02_RS31710 - 2707480..2707791 (-) 312 WP_229254174.1 hypothetical protein -
  KZC02_RS31715 - 2707788..2708210 (-) 423 WP_229254175.1 hypothetical protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50490.04 Da        Isoelectric Point: 5.8343

>NTDB_id=595827 KZC02_RS10860 WP_221394127.1 2703122..2704495(-) (radA) [Dyadobacter sp. NIV53]
MAKAKTAYFCQECGYNSPKWVGKCPSCGEWNTFVQEVIEKEDAKPTVSWKSVNLASKPKAIAEIIYENEPRIATADQELN
RVLGGGIVQGSLVLIGGEPGIGKSTLMLQIALTLSDKRVLYVSGEESEQQIKMRAERMSSKSDKCFILTETQTQSIFRQI
EEFQPEILIIDSIQTMQSTYIESGAGSISQVRECTAEFMKYAKETGVPVFLIGHITKDGSLAGPKVLEHMVDTVLQFEGD
RHTTYRILRTMKNRFGSTSELGIYEMHSEGLRQVSNPSEILISQRDEPVSGIAIGSMMEGNRPLLIEIQSLVSVATYGTP
QRSSTGFDAKRLQMLLAVLEKRGGFRLGVQDVFLNVAGGLRVEDPAIDLSVIASIVSSYEDKFIPASACFAAEVGLGGEV
RAVSRIESRISEAEKLGFKKIYISKYNSKGLDLERSKIKIIPVAHLDQLFMDLFLNQ

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=595827 KZC02_RS10860 WP_221394127.1 2703122..2704495(-) (radA) [Dyadobacter sp. NIV53]
ATGGCCAAAGCCAAAACAGCTTATTTTTGCCAGGAATGTGGGTATAATTCGCCCAAATGGGTGGGAAAATGTCCTTCATG
CGGCGAATGGAATACATTTGTACAGGAAGTTATAGAAAAAGAAGATGCGAAACCAACCGTTTCCTGGAAATCGGTAAATC
TGGCAAGTAAGCCAAAGGCAATCGCTGAAATTATTTATGAAAATGAACCCCGTATTGCCACTGCTGACCAGGAACTTAAT
CGTGTATTGGGAGGTGGGATCGTACAGGGATCGCTGGTATTAATAGGAGGAGAGCCAGGAATTGGGAAGTCGACGCTGAT
GCTTCAGATAGCACTTACGCTTTCAGACAAGCGGGTTTTATATGTTTCGGGTGAAGAATCGGAACAACAGATTAAGATGC
GTGCGGAACGAATGTCATCTAAAAGTGATAAATGTTTTATTCTGACCGAAACCCAGACACAAAGTATTTTTCGCCAGATT
GAGGAATTTCAACCTGAAATTCTGATCATCGATTCTATTCAGACTATGCAGTCTACCTATATTGAGTCAGGTGCAGGCAG
CATATCCCAAGTGCGGGAATGTACGGCGGAATTTATGAAATATGCAAAAGAAACAGGAGTTCCGGTTTTTCTGATCGGGC
ACATTACCAAGGACGGATCTTTGGCGGGCCCAAAAGTGCTTGAACATATGGTTGACACGGTATTGCAATTCGAGGGAGAC
CGGCATACTACATACCGGATCTTGCGTACAATGAAAAATCGTTTCGGAAGTACTTCTGAACTAGGTATATATGAAATGCA
CAGCGAAGGTTTAAGGCAAGTCAGCAATCCTTCTGAAATCCTGATTTCCCAGCGCGATGAACCTGTGAGTGGAATTGCAA
TTGGTTCTATGATGGAAGGAAACCGCCCTTTATTAATTGAGATACAGTCGTTAGTAAGTGTTGCTACTTATGGAACTCCA
CAGCGGAGCAGTACGGGATTTGATGCAAAGCGGTTACAAATGTTATTGGCAGTTCTTGAAAAACGCGGTGGGTTCCGGTT
AGGTGTACAGGATGTTTTCCTGAATGTTGCAGGAGGCCTGAGAGTGGAAGATCCGGCAATCGATTTGTCCGTAATAGCTT
CTATTGTATCATCTTATGAAGATAAGTTTATTCCTGCTTCAGCATGTTTTGCGGCGGAAGTAGGATTAGGCGGTGAAGTG
CGGGCTGTGAGTCGTATTGAAAGCAGAATATCAGAAGCTGAAAAGTTAGGTTTTAAGAAAATTTATATTTCGAAATATAA
CAGTAAAGGGCTGGATTTGGAACGCTCTAAAATAAAAATAATACCGGTAGCGCATCTCGATCAGCTGTTTATGGATTTGT
TCCTGAATCAGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(341-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.55

98.687

0.519
  radA Streptococcus pneumoniae Rx1

50.989

99.562

0.508
  radA Streptococcus pneumoniae D39

50.989

99.562

0.508
  radA Streptococcus pneumoniae R6

50.989

99.562

0.508
  radA Streptococcus pneumoniae TIGR4

50.989

99.562

0.508
  radA Streptococcus mitis NCTC 12261

50.769

99.562

0.505
  radA Streptococcus mitis SK321

50.769

99.562

0.505