Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   M8286_RS09325 Genome accession   NZ_CP097577
Coordinates   1926664..1928634 (-) Length   656 a.a.
NCBI ID   WP_275601032.1    Uniprot ID   -
Organism   Streptococcus suis strain 3112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1921664..1933634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8286_RS09300 (M8286_09455) - 1922369..1923718 (-) 1350 WP_002939907.1 glucose-6-phosphate isomerase -
  M8286_RS09305 (M8286_09460) - 1923839..1924792 (-) 954 WP_275600905.1 IS30 family transposase -
  M8286_RS09310 (M8286_09465) - 1925049..1925588 (-) 540 WP_275601030.1 hypothetical protein -
  M8286_RS09320 (M8286_09475) tadA 1925856..1926383 (-) 528 WP_275601031.1 tRNA adenosine(34) deaminase TadA -
  M8286_RS09325 (M8286_09480) recP/tkt 1926664..1928634 (-) 1971 WP_275601032.1 transketolase Machinery gene
  M8286_RS09330 (M8286_09485) ulaG 1928846..1929937 (-) 1092 WP_002938500.1 L-ascorbate 6-phosphate lactonase -
  M8286_RS09335 (M8286_09490) - 1930047..1931735 (-) 1689 WP_024384340.1 transcription antiterminator -
  M8286_RS09340 (M8286_09495) - 1931860..1932477 (-) 618 WP_012775380.1 hypothetical protein -
  M8286_RS09345 (M8286_09500) - 1932562..1933278 (-) 717 WP_014638763.1 L-ribulose-5-phosphate 4-epimerase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 70746.61 Da        Isoelectric Point: 4.7793

>NTDB_id=595752 M8286_RS09325 WP_275601032.1 1926664..1928634(-) (recP/tkt) [Streptococcus suis strain 3112]
MSNLSVNAIRFLGIDAIEKSKSGHPGVVMGAAPMAYSLFTKELRINPAQPNWINRDRFILSAGHGSMLLYGLLHLSGFED
VTMDEIKNFRQWGSKTPGHPEFGHTAGVDATTGPLGQGISTATGFAQAERFLAAKYNRDGFPIFDHYTYVICGDGDLMEG
VSAEAASYAGLQKLEKLIVLYDSNDINLDGETKDSFTEDVRARYNAYGWHTDLVTDGTDVDAIFAAIEKAKAAGKPSLIE
IKTVIGHGSPNKQGTNAVHGAPLGAEETEATRKALDWNYGPFEIPAEVYADFKANVADRGAAAYDAWVKLVEDYKVAHPE
LAAEVTAILEGRDVVEIKPEDFPVYENGFSQATRNSSQDALNAAAKVLPTFLGGSADLAHSNMTYIKEDGLQDSVNPLNR
NIQFGVREFAMGTILNGMAAHGGLRVYGGTFFVFSDYVKAAVRLSALQGLPVTYVFTHDSIAVGEDGPTHEPIEHLAGLR
AMPNLNVFRPADARETQAAWYLSLTSKSTPSALVLTRQNLTVEEGTDFDKVAKGAYVVYEAAGFDTILLASGSEVNLAVK
AAKELEAAGTKVRVVSVPSTELFDAQDAAYKEEILPNAIRRRLAIEMGATQSWYKYIGLDGKVLGIDTFGASAPAQTVID
NYGFTVENVVKLVGEL

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=595752 M8286_RS09325 WP_275601032.1 1926664..1928634(-) (recP/tkt) [Streptococcus suis strain 3112]
ATGTCAAATCTTTCAGTCAATGCGATTCGTTTCCTTGGTATTGATGCCATCGAAAAATCAAAATCAGGCCACCCAGGTGT
TGTCATGGGTGCGGCTCCAATGGCCTACAGCCTTTTTACTAAAGAGCTTCGTATCAACCCAGCTCAGCCAAACTGGATCA
ACCGTGACCGCTTTATCTTATCAGCAGGTCATGGGTCAATGCTCCTCTACGGACTTCTTCATTTGTCAGGATTTGAAGAT
GTCACTATGGATGAAATCAAGAACTTCCGTCAATGGGGTTCAAAAACACCAGGTCACCCAGAATTTGGTCACACAGCAGG
TGTAGATGCAACAACAGGTCCTCTTGGACAAGGTATCTCAACTGCGACAGGTTTTGCGCAAGCAGAGCGTTTCCTTGCAG
CTAAGTACAACCGTGATGGTTTCCCAATCTTTGACCACTATACTTACGTAATCTGTGGTGATGGCGACTTGATGGAAGGT
GTTTCTGCAGAAGCGGCTTCTTACGCAGGTCTTCAAAAATTAGAAAAACTCATCGTTCTTTACGATTCAAATGACATCAA
CTTGGATGGCGAAACAAAAGACTCCTTCACAGAAGATGTACGTGCCCGTTACAATGCTTATGGCTGGCATACAGACCTCG
TAACAGACGGTACAGATGTAGATGCCATCTTTGCTGCTATTGAAAAGGCAAAAGCCGCTGGTAAGCCATCTCTTATCGAA
ATCAAGACTGTTATCGGTCATGGTTCTCCAAATAAACAAGGTACAAATGCCGTTCACGGTGCTCCGCTTGGTGCAGAAGA
AACAGAAGCAACTCGTAAGGCGCTTGATTGGAACTATGGTCCATTTGAAATTCCAGCTGAAGTCTATGCAGACTTCAAAG
CTAACGTAGCTGATCGCGGTGCAGCAGCCTACGATGCTTGGGTAAAATTAGTTGAAGACTACAAAGTAGCTCATCCAGAA
TTAGCAGCTGAAGTAACAGCTATCTTGGAAGGTCGTGACGTAGTTGAAATCAAGCCAGAAGACTTCCCAGTTTACGAAAA
TGGCTTCTCACAAGCAACTCGTAATTCATCACAAGATGCCCTCAACGCAGCGGCTAAAGTTTTGCCAACCTTCCTTGGAG
GTTCAGCTGACTTGGCTCACTCAAACATGACCTATATCAAGGAAGATGGTTTGCAAGATTCAGTAAATCCTCTCAACCGC
AACATCCAGTTTGGTGTGCGTGAATTTGCTATGGGTACTATCTTGAATGGTATGGCAGCTCACGGCGGACTTCGTGTCTA
TGGTGGTACCTTCTTCGTCTTCTCAGACTATGTGAAAGCAGCAGTTCGTTTGTCAGCTCTTCAAGGACTTCCAGTGACTT
ATGTCTTCACTCATGACTCAATCGCAGTCGGTGAAGATGGTCCAACTCACGAGCCGATTGAGCACTTGGCAGGACTTCGT
GCTATGCCAAACCTCAATGTCTTCCGTCCAGCAGATGCGCGTGAAACACAGGCAGCTTGGTACTTGTCATTGACCAGCAA
GTCTACACCATCAGCCCTTGTTCTCACTCGTCAAAACTTGACTGTTGAAGAAGGTACAGACTTTGACAAGGTTGCAAAAG
GGGCTTATGTTGTCTATGAAGCAGCAGGCTTTGATACAATCCTTCTTGCATCTGGTTCAGAAGTCAACTTGGCTGTTAAA
GCTGCCAAAGAACTAGAAGCAGCAGGCACTAAGGTTCGTGTGGTTTCTGTGCCATCAACTGAACTCTTCGATGCACAAGA
CGCTGCCTACAAGGAAGAAATCCTTCCAAATGCTATCCGTCGTCGTTTGGCGATTGAAATGGGTGCAACTCAAAGTTGGT
ACAAGTATATTGGCTTGGATGGTAAAGTCCTTGGTATCGACACCTTCGGTGCATCAGCTCCAGCCCAAACTGTTATCGAC
AACTACGGCTTCACCGTGGAAAATGTAGTGAAGTTGGTTGGCGAATTGTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-332)

Transketolase, C-terminal domain (Transketolase_C)

(537-649)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

81.25

100

0.813