Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   M8286_RS09255 Genome accession   NZ_CP097577
Coordinates   1914850..1915299 (-) Length   149 a.a.
NCBI ID   WP_053867167.1    Uniprot ID   -
Organism   Streptococcus suis strain 3112     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1909850..1920299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8286_RS09240 (M8286_09395) - 1910510..1911139 (+) 630 WP_275601024.1 ABC transporter ATP-binding protein -
  M8286_RS09245 (M8286_09400) - 1911366..1913150 (-) 1785 WP_275601025.1 ABC transporter ATP-binding protein -
  M8286_RS09250 (M8286_09405) - 1913151..1914857 (-) 1707 WP_275601026.1 ABC transporter ATP-binding protein -
  M8286_RS09255 (M8286_09410) rcrR 1914850..1915299 (-) 450 WP_053867167.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  M8286_RS09260 (M8286_09415) - 1915521..1916537 (+) 1017 WP_014638751.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  M8286_RS09265 (M8286_09420) galU 1916582..1917481 (+) 900 WP_004298345.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  M8286_RS09270 (M8286_09425) - 1917502..1918179 (-) 678 WP_275601027.1 rhomboid family intramembrane serine protease -
  M8286_RS09275 (M8286_09430) - 1918163..1918705 (-) 543 WP_358636526.1 5-formyltetrahydrofolate cyclo-ligase -
  M8286_RS09280 (M8286_09435) - 1918747..1919874 (-) 1128 WP_275601029.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17589.08 Da        Isoelectric Point: 7.1874

>NTDB_id=595751 M8286_RS09255 WP_053867167.1 1914850..1915299(-) (rcrR) [Streptococcus suis strain 3112]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSEVETFVKDIEAELKISKSVASNLVKRMEKNDFIQ
VLPSQFDRRYKQLVLTEKGRSKICHLKSFHEEMHHSLFRGIQKEEFDLIRQVADQLKENIQHYKEKNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=595751 M8286_RS09255 WP_053867167.1 1914850..1915299(-) (rcrR) [Streptococcus suis strain 3112]
ATGGGACATACTATTGCAGATTTTCGGAATCTATTAAATCAGATTGAACAAATCAGTGAAACCATTGCAAAGGAATATGA
TGTGGAACATCTAGCTGGACCACAGGGATGGGCCCTGCGTTTCATAGCAGAACGGTCTGAAGTTGAAACCTTTGTCAAAG
ACATTGAAGCGGAGTTGAAGATTTCCAAATCCGTTGCCAGCAATCTAGTTAAGCGAATGGAGAAAAATGACTTTATTCAG
GTTTTACCTTCTCAGTTTGACAGACGCTACAAGCAGTTGGTCTTGACAGAGAAAGGTCGGAGCAAGATTTGTCACTTAAA
ATCCTTCCATGAGGAGATGCACCATTCTCTCTTTCGAGGTATTCAAAAGGAAGAATTTGATTTGATCAGACAGGTAGCCG
ATCAATTAAAAGAAAATATTCAACACTATAAGGAGAAGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.972

94.631

0.416