Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   M8286_RS07295 Genome accession   NZ_CP097577
Coordinates   1502227..1503888 (-) Length   553 a.a.
NCBI ID   WP_358636125.1    Uniprot ID   -
Organism   Streptococcus suis strain 3112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1497227..1508888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8286_RS07265 (M8286_07380) - 1497521..1498369 (+) 849 WP_275600781.1 growth inhibitor PemK -
  M8286_RS07270 (M8286_07385) - 1498624..1499452 (+) 829 Protein_1389 tyrosine-type recombinase/integrase -
  M8286_RS07275 (M8286_07390) - 1499541..1499816 (-) 276 WP_024385016.1 HU family DNA-binding protein -
  M8286_RS07280 (M8286_07395) - 1499906..1500502 (-) 597 WP_136581149.1 YpmS family protein -
  M8286_RS07285 (M8286_07400) - 1500474..1501307 (-) 834 WP_275600782.1 SGNH/GDSL hydrolase family protein -
  M8286_RS07290 (M8286_07405) - 1501300..1502133 (-) 834 WP_275600783.1 DegV family protein -
  M8286_RS07295 (M8286_07410) recN 1502227..1503888 (-) 1662 WP_358636125.1 DNA repair protein RecN Machinery gene
  M8286_RS07300 (M8286_07415) - 1503891..1504316 (-) 426 WP_002936261.1 arginine repressor -
  M8286_RS07305 (M8286_07420) - 1504309..1505130 (-) 822 WP_275600785.1 TlyA family RNA methyltransferase -
  M8286_RS07310 (M8286_07425) - 1505123..1505992 (-) 870 WP_358636136.1 polyprenyl synthetase family protein -
  M8286_RS07315 (M8286_07430) - 1505992..1506207 (-) 216 WP_002936269.1 exodeoxyribonuclease VII small subunit -
  M8286_RS07320 (M8286_07435) xseA 1506182..1507525 (-) 1344 WP_105248744.1 exodeoxyribonuclease VII large subunit -
  M8286_RS07325 (M8286_07440) - 1507750..1508658 (+) 909 WP_029186525.1 neutral zinc metallopeptidase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62702.84 Da        Isoelectric Point: 4.6252

>NTDB_id=595734 M8286_RS07295 WP_358636125.1 1502227..1503888(-) (recN) [Streptococcus suis strain 3112]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAATAEIEGLFSFENSRALEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLLQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=595734 M8286_RS07295 WP_358636125.1 1502227..1503888(-) (recN) [Streptococcus suis strain 3112]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAACGGGATGACCATCCT
ATCTGGTGAAACAGGTGCAGGTAAATCCATTATCATTGATGCCATGAACCTGATGTTAGGGGCGCGTGCGACGACAGATG
TTATCAGACACGGGGCCGCCACGGCTGAGATTGAAGGGCTTTTTTCCTTTGAAAATAGCAGAGCTCTTGAGCAGATTTTA
CTTGAACAAGGGATTGAAGTGGCTGACGAACTCATTATCCGTCGTGAAATCCTACAAAATGGACGTTCGGTCAGCCGTGT
CAATGGACAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTGGATATTCATGGTCAACATGACCAGG
AAGAATTGATGAAGTCCCAGCACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATGAGTTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGCCTATCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAGGAACACAAGGC
GCGAATTGAGATGTTGGAATACCAAATTGCTGAAATCGAAGCAGCAGACTTGAAGTCTGGCGAAGATATTCAACTCAATC
AGGAACGCGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTCCGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGACCCAGACTACAAACAGCT
CTCTTCTAGCCTGACAGAAGCTTATTATGTCGTTGAAGATGTGACCAAGCGTCTCAGTGATGTGGTGGACAATCTAGATT
TTGATGGCAATCGTCTCTTGCAATTGGAAAGTCGTCTGGATTTGCTCAATACCATTACGAAGAAATATGGTGGAACTGTC
GATGATGTTTTGGATTATTTTAGTAAAATCAGCGAAGAATACAATCTATTGACAGGGAATGATTTATCTGGAGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCCAATCACGCCATGAATTAGCTG
TTGTTTTAGAAGATATTATCCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACCAAA
GGAAAATTTAATCGAGAAGGAAATGAAACAGTCGAATTTTACATCTCCACCAACCCAGGTGAAGACTTCAAGCCTCTGGT
TAAGGTGGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAAGAAGGTAAAACTT
CTATTGTCTTTGATGAGGTGGATACAGGGGTATCTGGACGTGTGGCCCAGGCAATTGCCCAGAAAATTTACAAAATCGGA
CAATATGGTCAAGTATTGGCTATTTCCCATCTACCACAAGTCATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAGCATTCGACCGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CAGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.509

100

0.448