Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   M8286_RS04960 Genome accession   NZ_CP097577
Coordinates   1013897..1015633 (-) Length   578 a.a.
NCBI ID   WP_275601682.1    Uniprot ID   -
Organism   Streptococcus suis strain 3112     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1008897..1020633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8286_RS04945 (M8286_04975) - 1009541..1010827 (-) 1287 WP_002940676.1 homoserine dehydrogenase -
  M8286_RS04950 (M8286_04980) - 1010932..1011855 (+) 924 WP_275601680.1 polysaccharide deacetylase family protein -
  M8286_RS04955 (M8286_04985) rcrQ 1012080..1013888 (-) 1809 WP_358639375.1 ABC transporter ATP-binding protein Regulator
  M8286_RS04960 (M8286_04990) rcrP 1013897..1015633 (-) 1737 WP_275601682.1 ABC transporter ATP-binding protein Regulator
  M8286_RS04965 (M8286_04995) - 1015709..1015951 (-) 243 WP_012028079.1 KH domain-containing protein -
  M8286_RS04970 (M8286_05000) rpsP 1015973..1016245 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  M8286_RS04975 (M8286_05005) - 1016370..1016678 (-) 309 WP_275601683.1 DUF4298 domain-containing protein -
  M8286_RS04980 (M8286_05010) pcp 1016678..1017325 (-) 648 WP_275601684.1 pyroglutamyl-peptidase I -
  M8286_RS04985 (M8286_05015) - 1017322..1018089 (-) 768 WP_275601685.1 class I SAM-dependent methyltransferase -
  M8286_RS04990 (M8286_05020) - 1018225..1018899 (-) 675 WP_275601686.1 hypothetical protein -
  M8286_RS04995 (M8286_05025) - 1019226..1019579 (-) 354 WP_275601687.1 hypothetical protein -
  M8286_RS05000 (M8286_05030) - 1019597..1020253 (-) 657 WP_358639383.1 hypothetical protein -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65128.41 Da        Isoelectric Point: 5.1965

>NTDB_id=595723 M8286_RS04960 WP_275601682.1 1013897..1015633(-) (rcrP) [Streptococcus suis strain 3112]
MNLIWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQEERFESVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALDPLKSGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
DGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=595723 M8286_RS04960 WP_275601682.1 1013897..1015633(-) (rcrP) [Streptococcus suis strain 3112]
ATGAATCTGATTTGGACCTACTTAAAAAAATATCCTAAGTGGATTGCCTTAGACTTGTTGGGGGCCTTCTTATTTGTAGT
GGTAAACTTGGGCTTGCCGACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGATTGATTGTCCTGCTCGGTATTGTTGGCCGAGTGACACTTGCCTATGCAGCTGGAAAATTG
ACTACCAATATCGTCAAAGATATTCGAAATGATCTGTATGAGAAAATTCAGGACTACTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAACGATGCTTTTGTTCTTATGCAATTCTCTGAAATGGTGTTGAAATTAG
GTATTATTACACCCTTGATGATGATTGCTTCTGTCATCATGACCTTGGTAACCAGTCCGAGCTTAGCCTGGACAGTAGCA
GTAGCCATGCCTTTTCTAGTTTTTGTTATTTTCTATGTGGCAACCAAAACTCGTCCTCTTTCTGAAAAGCAACAAAAACG
TTTGGACACGATCAACCAATATGTTCGTGAAAATCTCATGGGCTTACGTGTTATTCGTGCCTTTACTCGTGAGGAGTTTC
AAGAGGAGCGCTTTGAGTCGGTCAATGAAGAATATACAGATATTTCCAAAAAACTCTTTAATCTGACTGGATTGACAGAG
CCGCTCTTTGTCCAGATTATCATTGCTATGATTGTGGCCATTGTCTGGTTTGCTTTGGATCCATTGAAATCAGGCAGTCT
GCAAATCGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCTTTCTTGCTCTTTGCCAACTTGTTTA
ACATGTATCCACGTATGTCGGTATCGAGCCAACGGATTCAGGAAGTCTTGGACATGCCGATTTCCATTTCTAAGAATGAG
GATGGCATTACTGAAACAGACACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTATCCTGGTGAAACGGAATC
GCCTGTTCTCCACAATATTTCATTTAAGGCTAAGCCTGGTGAAACCATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGCAGCAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCTGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGATACCCATCTAGCTGAGGGCGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCGCGTGCCATTGTCAAACAGCCCGATATTTATATCTTTGATGACTCTTTCTCAGCCTTGGATTATAAGACGGATGC
GATTTTGAGGAGTCGTTTGAAGGAAGTGACGGAAAATGCGACCGTCTTGATAGTTGCCCAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAACGAAGGTGAAATTGTCGGTCGTGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTACCGAGAAATTGCCAACTCTCAACTTAACCGTCAATCCTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.667

100

0.401