Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   M8286_RS04955 Genome accession   NZ_CP097577
Coordinates   1012080..1013888 (-) Length   602 a.a.
NCBI ID   WP_358639375.1    Uniprot ID   -
Organism   Streptococcus suis strain 3112     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1007080..1018888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8286_RS04935 (M8286_04965) murB 1007535..1008443 (-) 909 WP_024410097.1 UDP-N-acetylmuramate dehydrogenase -
  M8286_RS04940 (M8286_04970) thrB 1008677..1009537 (-) 861 WP_002938588.1 homoserine kinase -
  M8286_RS04945 (M8286_04975) - 1009541..1010827 (-) 1287 WP_002940676.1 homoserine dehydrogenase -
  M8286_RS04950 (M8286_04980) - 1010932..1011855 (+) 924 WP_275601680.1 polysaccharide deacetylase family protein -
  M8286_RS04955 (M8286_04985) rcrQ 1012080..1013888 (-) 1809 WP_358639375.1 ABC transporter ATP-binding protein Regulator
  M8286_RS04960 (M8286_04990) rcrP 1013897..1015633 (-) 1737 WP_275601682.1 ABC transporter ATP-binding protein Regulator
  M8286_RS04965 (M8286_04995) - 1015709..1015951 (-) 243 WP_012028079.1 KH domain-containing protein -
  M8286_RS04970 (M8286_05000) rpsP 1015973..1016245 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  M8286_RS04975 (M8286_05005) - 1016370..1016678 (-) 309 WP_275601683.1 DUF4298 domain-containing protein -
  M8286_RS04980 (M8286_05010) pcp 1016678..1017325 (-) 648 WP_275601684.1 pyroglutamyl-peptidase I -
  M8286_RS04985 (M8286_05015) - 1017322..1018089 (-) 768 WP_275601685.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67266.56 Da        Isoelectric Point: 6.0405

>NTDB_id=595722 M8286_RS04955 WP_358639375.1 1012080..1013888(-) (rcrQ) [Streptococcus suis strain 3112]
MKNRTVFTRVWDYLRRYKSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDMANGVEGAQINYSYIAIMLAIYALR
ALLYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAMFMCFWLDVSLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGFSNIAYVVVALLSGLKVLAGQLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTASLTGQVSFEQVEFGYSEDKPLIRNFTLDVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRKISRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSQSNTLRKSKADVVDSI

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=595722 M8286_RS04955 WP_358639375.1 1012080..1013888(-) (rcrQ) [Streptococcus suis strain 3112]
ATGAAGAATAGAACAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACAAATCTTCTGTATTTTTAGCTGTTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTGGAGCCCTTTGTACTGGGGCTTATCATCACAGAATTGACCAAGAATCTGT
TGGACATGGCAAATGGAGTAGAAGGAGCGCAAATTAACTATTCCTACATTGCCATCATGCTTGCCATCTATGCTCTTCGT
GCTCTTCTATATGAAATCGGTGCCTATGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACCAAGGAACTACG
TCAGGACTTGAGCCACAAAATTAACAAGATTCCAGTATCTTATTTTGACAAGCACCAGTATGGTGATTTACTCGGACGTT
TTACAAGCGATGTGGAGACTGTGTCGAACGCTCTGCAACAAAGTTTTCTCCAGCTAGTCAATGCCGTTCTAACTCTCTCT
CTAGCCATGTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTTGTAGTCGTAACCCTGGTTCCAGTGACCTATTTTGG
TTCTAAGTTTGTCATGGGCAAATCCCAGCCTTATTTCAAACAGCAGGCTGATGCCCTAGGTCGATTGAACGGCTTTGTCC
AAGAAAATCTGACTGGTTTCAACGTTCTCAAACTCTACGGCCGTGAAGAAATTTCTACAGAAGAGTTTCGCCAGATTACC
GCAGATTTGCAGGAAGTTGGTTTCAAGGCTAGTTTCATGTCTGGTTTGCTCATGCCTCTAGTTCACGGCTTCTCAAACAT
CGCCTATGTCGTCGTCGCCCTACTTTCTGGTCTGAAAGTACTTGCCGGTCAATTGACAGTAGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAGTTGGCACCCCAGTTGCAGTCTGCTAAATCTTCC
CTTGAACGCATCTTTTCGGTCTTAGATGAGCTTGACGAAGAAGACGCCAATGCGCTAGAGTTGACAGCTAGTCTGACCGG
ACAAGTCAGCTTTGAACAGGTCGAATTTGGCTATTCAGAAGACAAGCCGCTTATCCGTAACTTTACTCTTGATGTTAAGC
CAGGTGAAATGGTGGCTATCGTTGGACCAACAGGGGCTGGTAAGACAACCCTCATCAACCTTCTCATGCGTTTCTATGAT
GTCACATCCGGTGCTATCAAGGTGGATGGTCAGGATATTAGAAAGATTTCTCGTCAATCCTACCGTAGTCAATTTGGTAT
GGTCTTGCAGGATGCTTGGCTCTACGAAGGGACCATCAAGGAAAACCTGCGTTTTGGACGTCTGGATGCGACGGATGAGG
AAATTGTGGAGGCTGCTAAAGCTGCCAACGTTGACCACTTTATCCGTACCCTGCCTGGCGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCGCGTGCCTTGTTGGCGGATCCTGCCATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAGGCCATGAAACGGTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCTCATCGCTTATCTACCATCCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCTGACAAAGGTTTCTATTATAATCTGTATCAAAGTCAGTTTAGTCA
ATCTAATACTCTTCGAAAATCAAAAGCAGACGTTGTTGACTCGATTTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.051

98.007

0.422