Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   M8286_RS01975 Genome accession   NZ_CP097577
Coordinates   396543..397160 (-) Length   205 a.a.
NCBI ID   WP_004194173.1    Uniprot ID   A0A0H3N278
Organism   Streptococcus suis strain 3112     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 391543..402160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8286_RS01965 (M8286_01975) - 392988..394339 (+) 1352 WP_275601325.1 IS3 family transposase -
  M8286_RS01970 (M8286_01980) pbp1a 394388..396562 (-) 2175 WP_275601326.1 penicillin-binding protein PBP1A -
  M8286_RS01975 (M8286_01985) recU 396543..397160 (-) 618 WP_004194173.1 Holliday junction resolvase RecU Machinery gene
  M8286_RS01980 (M8286_01990) - 397226..397765 (+) 540 WP_024406404.1 DUF1273 domain-containing protein -
  M8286_RS01985 (M8286_01995) gpsB 397836..398171 (+) 336 WP_004194167.1 cell division regulator GpsB -
  M8286_RS01995 (M8286_02005) - 398728..399894 (+) 1167 WP_029172045.1 class I SAM-dependent RNA methyltransferase -
  M8286_RS02000 (M8286_02010) - 399904..401358 (+) 1455 WP_275601327.1 cell division site-positioning protein MapZ family protein -
  M8286_RS02005 (M8286_02015) - 401577..402059 (-) 483 WP_358638903.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23805.40 Da        Isoelectric Point: 9.9440

>NTDB_id=595691 M8286_RS01975 WP_004194173.1 396543..397160(-) (recU) [Streptococcus suis strain 3112]
MVNYPHKVSKKINRTSPISSQRVNFANRGMSFEAAINDSNQYYLAHDIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVFKRHYIDFEAKETRQKASMPMKNFHAHQIEHMKQVVKQGGICFVLLHFSTLKETYLLPATHLIEFYQVDMG
SKSMPLTFIRQYGFEIQMGRFPSIPYLEIVEKNLLGGESFENYNN

Nucleotide


Download         Length: 618 bp        

>NTDB_id=595691 M8286_RS01975 WP_004194173.1 396543..397160(-) (recU) [Streptococcus suis strain 3112]
ATGGTCAATTATCCTCATAAGGTGTCAAAAAAAATCAATAGAACCAGTCCTATTTCATCCCAGCGAGTAAACTTTGCTAA
TCGCGGAATGTCTTTTGAGGCCGCTATCAACGATAGCAATCAATATTACCTTGCGCACGATATTGCTGTCATTCACAAGA
AGCCAACTCCCGTGCAAATTGTAAAAGTTGATTACCCCAAACGGAGCCGTGCTAAGATTGTCGAGGCATACTTTCGACAG
GCATCTACCACAGACTACTCTGGTGTTTTTAAAAGACATTATATTGATTTTGAAGCGAAAGAGACACGCCAAAAAGCATC
CATGCCCATGAAAAATTTTCATGCGCATCAGATTGAACACATGAAACAGGTTGTAAAACAAGGTGGCATTTGTTTTGTCC
TTCTTCACTTTTCAACATTAAAAGAAACCTATCTCTTGCCAGCCACTCATTTGATTGAATTTTATCAAGTAGACATGGGT
AGTAAGTCGATGCCTCTAACCTTTATTCGACAATACGGCTTTGAGATTCAAATGGGGCGTTTCCCCAGCATCCCATATCT
GGAAATCGTTGAAAAAAATCTATTAGGTGGTGAATCTTTTGAAAACTACAACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N278

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.744

97.073

0.473