Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   M8286_RS00210 Genome accession   NZ_CP097577
Coordinates   28539..29321 (+) Length   260 a.a.
NCBI ID   WP_275601123.1    Uniprot ID   -
Organism   Streptococcus suis strain 3112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23539..34321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8286_RS00190 (M8286_00185) mreD 24360..24875 (+) 516 WP_024385106.1 rod shape-determining protein MreD -
  M8286_RS00195 (M8286_00190) pcsB 24960..26216 (+) 1257 WP_275601121.1 peptidoglycan hydrolase PcsB -
  M8286_RS00200 (M8286_00195) - 26319..27287 (+) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  M8286_RS00205 (M8286_00200) - 27374..28552 (+) 1179 WP_202848843.1 pyridoxal phosphate-dependent aminotransferase -
  M8286_RS00210 (M8286_00205) recO 28539..29321 (+) 783 WP_275601123.1 DNA repair protein RecO Machinery gene
  M8286_RS00215 (M8286_00210) plsX 29318..30325 (+) 1008 WP_275601124.1 phosphate acyltransferase PlsX -
  M8286_RS00220 (M8286_00215) - 30318..30566 (+) 249 WP_014637254.1 phosphopantetheine-binding protein -
  M8286_RS00225 (M8286_00220) purC 30684..31391 (+) 708 WP_275601125.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30465.00 Da        Isoelectric Point: 5.4193

>NTDB_id=595666 M8286_RS00210 WP_275601123.1 28539..29321(+) (recO) [Streptococcus suis strain 3112]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVLPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKNLDLMESGLDYEILTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRLFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=595666 M8286_RS00210 WP_275601123.1 28539..29321(+) (recO) [Streptococcus suis strain 3112]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTTTACAATCGGAATTTTCGAGAAGATGACAAGCTGGTCAAGATTTTTAC
GGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCTTCTAAGTCCAAGTTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTTAAAATCAATGATGACGGTCTGTCTTATATCGAAGATTTTCATCAGGTACTGCCATTTAAGAAT
ATTAACGGCGATATTTTCAAGCTTAGCTATGCTACCTATATCTTGGCCTTGGCAGATGCGGCCTTGCAGGATAAGGTTTA
TGACCCAGCCCTCTTTGCATTTTTGGTCAAGAACTTAGATTTGATGGAGTCGGGTTTGGACTATGAAATTTTGACCAATA
TCTTTGAAATTCAGCTCTTGGGACGATTTGGGATCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCCTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGCTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-72)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

68.924

96.538

0.665