Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   K3176_RS15130 Genome accession   NZ_CP081202
Coordinates   3157108..3157743 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain P9W     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3152108..3162743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3176_RS15100 (K3176_15100) murB 3153206..3154225 (-) 1020 WP_003106928.1 UDP-N-acetylmuramate dehydrogenase -
  K3176_RS15105 (K3176_15105) - 3154222..3154686 (-) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  K3176_RS15110 (K3176_15110) kdsB 3154686..3155450 (-) 765 WP_023120398.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K3176_RS15115 (K3176_15115) - 3155450..3155635 (-) 186 WP_003091157.1 Trm112 family protein -
  K3176_RS15120 (K3176_15120) lpxK 3155673..3156671 (-) 999 WP_023120397.1 tetraacyldisaccharide 4'-kinase -
  K3176_RS15125 (K3176_15125) - 3156671..3157111 (-) 441 WP_003091161.1 biopolymer transporter ExbD -
  K3176_RS15130 (K3176_15130) exbB 3157108..3157743 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K3176_RS15135 (K3176_15135) comA 3157816..3160041 (-) 2226 WP_003119806.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K3176_RS15140 (K3176_15140) - 3160172..3160705 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  K3176_RS15145 (K3176_15145) - 3160793..3162037 (-) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=595656 K3176_RS15130 WP_003091163.1 3157108..3157743(-) (exbB) [Pseudomonas aeruginosa strain P9W]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=595656 K3176_RS15130 WP_003091163.1 3157108..3157743(-) (exbB) [Pseudomonas aeruginosa strain P9W]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81