Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   M9A05_RS16925 Genome accession   NZ_CP097575
Coordinates   3663996..3664520 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain UNC_PaerCF25     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3658996..3669520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9A05_RS16905 (M9A05_16905) - 3659063..3661534 (-) 2472 WP_003095841.1 penicillin-binding protein 1A -
  M9A05_RS16910 (M9A05_16910) pilM 3661719..3662783 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  M9A05_RS16915 (M9A05_16915) pilN 3662783..3663379 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  M9A05_RS16920 (M9A05_16920) pilO 3663376..3663999 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  M9A05_RS16925 (M9A05_16925) comL/pilP 3663996..3664520 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  M9A05_RS16930 (M9A05_16930) pilQ 3664574..3666718 (+) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  M9A05_RS16935 (M9A05_16935) aroK 3666730..3667248 (+) 519 WP_003095833.1 shikimate kinase AroK -
  M9A05_RS16940 (M9A05_16940) aroB 3667298..3668404 (+) 1107 WP_003112148.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=595632 M9A05_RS16925 WP_003095836.1 3663996..3664520(+) (comL/pilP) [Pseudomonas aeruginosa strain UNC_PaerCF25]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=595632 M9A05_RS16925 WP_003095836.1 3663996..3664520(+) (comL/pilP) [Pseudomonas aeruginosa strain UNC_PaerCF25]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362