Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   M8789_RS06950 Genome accession   NZ_CP097571
Coordinates   1470911..1471537 (+) Length   208 a.a.
NCBI ID   WP_001108885.1    Uniprot ID   Q2YY57
Organism   Staphylococcus aureus strain V40     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1465911..1476537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8789_RS06915 (M8789_06915) - 1466895..1467227 (-) 333 WP_000516800.1 DUF4889 domain-containing protein -
  M8789_RS06920 (M8789_06920) - 1467311..1468456 (-) 1146 WP_000487143.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  M8789_RS06930 (M8789_06930) gpsB 1469107..1469451 (-) 345 WP_001286320.1 cell division regulator GpsB -
  M8789_RS06935 (M8789_06935) - 1469465..1470028 (-) 564 WP_000241308.1 DUF1273 domain-containing protein -
  M8789_RS06940 (M8789_06940) - 1470021..1470371 (-) 351 WP_001000802.1 YppE family protein -
  M8789_RS06945 (M8789_06945) - 1470426..1470605 (-) 180 WP_041201400.1 hypothetical protein -
  M8789_RS06950 (M8789_06950) recU 1470911..1471537 (+) 627 WP_001108885.1 Holliday junction resolvase RecU Machinery gene
  M8789_RS06955 (M8789_06955) - 1471534..1473717 (+) 2184 WP_000138346.1 transglycosylase domain-containing protein -
  M8789_RS06960 (M8789_06960) - 1474235..1474576 (-) 342 WP_000182028.1 YpoC family protein -
  M8789_RS06965 (M8789_06965) nth 1474581..1475240 (-) 660 WP_000253765.1 endonuclease III -
  M8789_RS06970 (M8789_06970) - 1475230..1475916 (-) 687 WP_250164242.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24427.81 Da        Isoelectric Point: 9.7084

>NTDB_id=595524 M8789_RS06950 WP_001108885.1 1470911..1471537(+) (recU) [Staphylococcus aureus strain V40]
MNYPNGKPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHSNAFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEIFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=595524 M8789_RS06950 WP_001108885.1 1470911..1471537(+) (recU) [Staphylococcus aureus strain V40]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTATAGACGGAGGGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATGCGTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCTACGCCAGTACAAATAGTTAATGTCAACTATCCTAAACGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTGCCCTATTCAAAATTCGAAATATTTTGGAAG
AGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YY57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

53.14

99.519

0.529