Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   M8789_RS03500 Genome accession   NZ_CP097571
Coordinates   752664..753746 (+) Length   360 a.a.
NCBI ID   WP_014533094.1    Uniprot ID   -
Organism   Staphylococcus aureus strain V40     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 747664..758746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8789_RS03480 (M8789_03480) gdpS 748034..749104 (-) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -
  M8789_RS03485 (M8789_03485) - 749422..750477 (+) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  M8789_RS03490 (M8789_03490) - 750649..751290 (-) 642 WP_000192955.1 YigZ family protein -
  M8789_RS03495 (M8789_03495) fakB1 751434..752300 (+) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  M8789_RS03500 (M8789_03500) comFA 752664..753746 (+) 1083 WP_014533094.1 DEAD/DEAH box helicase Machinery gene
  M8789_RS03505 (M8789_03505) - 753739..754413 (+) 675 WP_001057968.1 ComF family protein -
  M8789_RS03510 (M8789_03510) hpf 754474..755046 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  M8789_RS03515 (M8789_03515) secA 755460..757991 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  M8789_RS03520 (M8789_03520) - 758033..758131 (+) 99 WP_001791369.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 41985.46 Da        Isoelectric Point: 9.6802

>NTDB_id=595493 M8789_RS03500 WP_014533094.1 752664..753746(+) (comFA) [Staphylococcus aureus strain V40]
MDNVTRYKITESSQSASQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPNENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYIHSEDVFRFEKVEQLRNGQFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=595493 M8789_RS03500 WP_014533094.1 752664..753746(+) (comFA) [Staphylococcus aureus strain V40]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTGCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGGCGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCAACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACATTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATATCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACAATTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGTCGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCAAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.233

94.167

0.369