Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PAC42_RS02290 Genome accession   NZ_CP097560
Coordinates   507738..508103 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain C4.2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 502738..513103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAC42_RS02260 (PAC42_02260) pyrR 503360..503872 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  PAC42_RS02265 (PAC42_02265) ruvX 503984..504418 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  PAC42_RS02270 (PAC42_02270) - 504418..504987 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  PAC42_RS02275 (PAC42_02275) - 505036..505929 (-) 894 WP_003084580.1 TonB family protein -
  PAC42_RS02280 (PAC42_02280) gshB 506076..507029 (-) 954 WP_003100943.1 glutathione synthase -
  PAC42_RS02285 (PAC42_02285) pilG 507284..507691 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  PAC42_RS02290 (PAC42_02290) pilH 507738..508103 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  PAC42_RS02295 (PAC42_02295) - 508154..508690 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  PAC42_RS02300 (PAC42_02300) pilJ 508775..510823 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  PAC42_RS02305 (PAC42_02305) pilK 510884..511759 (+) 876 WP_073666654.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=595384 PAC42_RS02290 WP_003084587.1 507738..508103(+) (pilH) [Pseudomonas aeruginosa strain C4.2]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=595384 PAC42_RS02290 WP_003084587.1 507738..508103(+) (pilH) [Pseudomonas aeruginosa strain C4.2]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364