Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   PAC42_RS02105 Genome accession   NZ_CP097560
Coordinates   475162..476538 (+) Length   458 a.a.
NCBI ID   WP_061201405.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain C4.2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 470162..481538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAC42_RS02085 (PAC42_02085) - 470999..471565 (-) 567 WP_003110405.1 hypothetical protein -
  PAC42_RS02090 (PAC42_02090) rsmD 471568..472164 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PAC42_RS02095 (PAC42_02095) - 472164..473651 (-) 1488 WP_003459246.1 M16 family metallopeptidase -
  PAC42_RS02100 (PAC42_02100) - 473644..475041 (-) 1398 WP_003084498.1 M16 family metallopeptidase -
  PAC42_RS02105 (PAC42_02105) pilA 475162..476538 (+) 1377 WP_061201405.1 signal recognition particle-docking protein FtsY Machinery gene
  PAC42_RS02110 (PAC42_02110) ftsE 476535..477206 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  PAC42_RS02115 (PAC42_02115) ftsX 477206..478213 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  PAC42_RS02120 (PAC42_02120) rpoH 478327..479181 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  PAC42_RS02125 (PAC42_02125) - 479246..479851 (+) 606 WP_003084511.1 hypothetical protein -
  PAC42_RS02130 (PAC42_02130) mtgA 479856..480587 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  PAC42_RS02135 (PAC42_02135) - 480624..481001 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  PAC42_RS02140 (PAC42_02140) thiS 481104..481304 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48777.19 Da        Isoelectric Point: 4.4808

>NTDB_id=595380 PAC42_RS02105 WP_061201405.1 475162..476538(+) (pilA) [Pseudomonas aeruginosa strain C4.2]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPAPV
AEAPLASDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGL
SKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPV
EQPLQVDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSA
SVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELT
GLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=595380 PAC42_RS02105 WP_061201405.1 475162..476538(+) (pilA) [Pseudomonas aeruginosa strain C4.2]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGGCGCCGGTT
GCCGAAGCACCGCTCGCCAGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCAACC
CGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCG
TTGCGCCGCTGGCCGCCGCGCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTG
TCCAAGACCAGCGCCAGCATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGA
CGACATCGAGACGCGCCTGCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCG
TGGCGCGCAAGGAGCTGGCCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTG
GAGCAGCCGTTGCAGGTCGACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTTGGGGTGAACGGCGTGGGCAAGACCAC
CACCATCGGCAAGCTGGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCG
CCGCCGTGGAGCAGTTGCAGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCC
TCGGTGATCTTCGACGCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCA
TACCAAGGACAACCTGATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGG
TCCTGCTGGTGCTCGACGCCGGCACCGGGCAGAACGCCATCAATCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACC
GGCCTGGCCCTGACCAAACTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGAT
CCGCTATATCGGTGTCGGCGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAG
AGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(168-233)

SRP54-type protein, GTPase domain (SRP54)

(253-452)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

46.591

96.07

0.448