Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K4H25_RS05935 Genome accession   NZ_CP081149
Coordinates   1273876..1275231 (+) Length   451 a.a.
NCBI ID   WP_221022436.1    Uniprot ID   -
Organism   Deefgea piscis strain D13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1268876..1280231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4H25_RS05920 (K4H25_05920) flgJ 1269459..1270400 (+) 942 WP_221022433.1 flagellar assembly peptidoglycan hydrolase FlgJ -
  K4H25_RS05925 (K4H25_05925) flgK 1270431..1272449 (+) 2019 WP_221022434.1 flagellar hook-associated protein FlgK -
  K4H25_RS05930 (K4H25_05930) flgL 1272474..1273817 (+) 1344 WP_221022435.1 flagellar hook-associated protein FlgL -
  K4H25_RS05935 (K4H25_05935) radA 1273876..1275231 (+) 1356 WP_221022436.1 DNA repair protein RadA Machinery gene
  K4H25_RS05940 (K4H25_05940) trxA 1275342..1275668 (+) 327 WP_173533496.1 thioredoxin TrxA -
  K4H25_RS05945 (K4H25_05945) rho 1275799..1277055 (+) 1257 WP_173533497.1 transcription termination factor Rho -
  K4H25_RS05950 (K4H25_05950) rpmE 1277144..1277353 (+) 210 WP_173533498.1 50S ribosomal protein L31 -
  K4H25_RS05955 (K4H25_05955) - 1277447..1279072 (+) 1626 WP_221022437.1 glycosyltransferase family 39 protein -
  K4H25_RS05960 (K4H25_05960) - 1279159..1279323 (-) 165 WP_173533500.1 DUF3149 domain-containing protein -
  K4H25_RS05965 (K4H25_05965) - 1279455..1280018 (-) 564 WP_308443245.1 YajQ family cyclic di-GMP-binding protein -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48158.79 Da        Isoelectric Point: 7.7238

>NTDB_id=595361 K4H25_RS05935 WP_221022436.1 1273876..1275231(+) (radA) [Deefgea piscis strain D13]
MSKVKTTFVCRVCGGTSPKWQGQCPQCGDWNTLEESVVENKAATGRFQSLAADGAIKNLSEVNAEEVPRIPTQMEELDRV
LGGGLVPGGVVLIGGDPGIGKSTLLLQALAKLSETQAVLYVSGEESAQQIALRARRLGVPTAKVRLYPEISLEKILLALT
AEVPKVVVIDSIQTMFTEALSSAPGSVAQVRECSSQLTRFAKRHGTSVLLVGHVTKDGAIAGPRVLEHIVDAVLYFEGDT
HSSFRLIRAIKNRFGAVNELGVFAMTDKGLREVSNPSAMFLSQHAEPVAGSCVMVTQEGTRPMLVEVQALVDDAHSPQVK
RLAVGVEQNRLALLLAVLHRHAGIVAFDQDVFINAVGGVRISEPAADLAMLLAIVSSLKNKPLPAKMVVFGEVGLAGEVR
PVQRGQERLKEAAKLGFTHAIVPKANRPRQPIDGMTVISVERLDEAVAAAF

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=595361 K4H25_RS05935 WP_221022436.1 1273876..1275231(+) (radA) [Deefgea piscis strain D13]
ATGAGTAAAGTAAAAACGACTTTTGTTTGCCGTGTGTGTGGCGGTACATCGCCAAAGTGGCAAGGGCAATGCCCGCAATG
TGGCGACTGGAATACGCTGGAAGAAAGTGTGGTTGAAAACAAAGCGGCAACAGGGCGTTTTCAATCATTAGCTGCCGATG
GCGCGATTAAAAATCTTTCGGAAGTGAACGCCGAAGAAGTGCCGCGAATTCCAACCCAAATGGAAGAGCTCGATCGGGTT
TTGGGTGGCGGTTTAGTGCCCGGCGGTGTGGTGTTAATTGGTGGTGATCCAGGTATTGGTAAATCAACGCTGTTATTGCA
AGCTTTAGCCAAACTCTCTGAAACTCAGGCTGTCTTGTATGTTAGTGGTGAGGAATCAGCACAGCAAATTGCATTGAGGG
CACGTCGTTTGGGGGTGCCAACGGCGAAGGTGCGGCTTTATCCTGAGATCAGTTTGGAAAAAATATTATTAGCCCTGACT
GCCGAAGTGCCTAAAGTCGTGGTGATAGATTCGATTCAAACCATGTTTACTGAAGCACTAAGCAGTGCACCGGGTAGTGT
GGCACAAGTTAGAGAATGTTCATCGCAGCTGACTCGTTTTGCCAAGCGGCATGGCACTTCAGTACTCCTCGTTGGCCATG
TGACCAAAGACGGTGCCATTGCTGGGCCACGCGTGCTTGAGCATATTGTCGATGCGGTTTTGTATTTTGAAGGCGATACG
CATTCGAGTTTTCGTTTGATTCGAGCGATTAAAAATCGATTTGGCGCAGTGAATGAGTTGGGCGTTTTTGCCATGACTGA
TAAAGGTTTGCGCGAAGTTTCCAACCCATCTGCGATGTTTTTAAGTCAGCACGCGGAGCCCGTGGCTGGATCTTGTGTTA
TGGTCACGCAAGAAGGAACTCGGCCGATGTTGGTAGAGGTGCAGGCTTTGGTGGATGATGCCCATTCTCCGCAGGTAAAG
CGTTTGGCGGTTGGCGTTGAGCAAAATCGATTGGCTTTATTGTTGGCTGTATTGCATCGCCATGCTGGTATTGTCGCCTT
TGATCAAGACGTGTTTATTAATGCCGTTGGTGGGGTGCGAATTTCAGAGCCTGCAGCCGATTTAGCAATGCTGCTCGCCA
TTGTTTCGTCATTAAAAAATAAGCCCTTGCCTGCAAAAATGGTCGTTTTTGGTGAGGTTGGCTTGGCAGGTGAAGTGCGT
CCTGTGCAGCGTGGTCAAGAACGCCTGAAAGAGGCAGCTAAATTGGGTTTTACGCATGCGATTGTGCCTAAAGCCAATCG
ACCTCGGCAGCCCATTGACGGAATGACGGTGATTTCTGTCGAGCGCTTGGATGAGGCGGTTGCTGCTGCTTTTTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(359-426)

AAA domain (AAA_25)

(63-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

47.484

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.484

100

0.481
  radA Streptococcus mitis SK321

47.484

100

0.481
  radA Streptococcus pneumoniae Rx1

47.484

100

0.481
  radA Streptococcus pneumoniae R6

47.484

100

0.481
  radA Bacillus subtilis subsp. subtilis str. 168

47.174

100

0.481
  radA Streptococcus mitis NCTC 12261

47.788

100

0.479