Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   JW646_RS17070 Genome accession   NZ_CP081135
Coordinates   3527082..3528845 (+) Length   587 a.a.
NCBI ID   WP_228415772.1    Uniprot ID   A0AAX2ZDC5
Organism   Terrisporobacter hibernicus strain MCA3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3522082..3533845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW646_RS17055 (JW646_17035) - 3523427..3524485 (-) 1059 WP_074916239.1 HAMP domain-containing sensor histidine kinase -
  JW646_RS17060 (JW646_17040) - 3524475..3525152 (-) 678 WP_074916241.1 response regulator transcription factor -
  JW646_RS17065 (JW646_17045) rcrP 3525320..3527089 (+) 1770 WP_228415771.1 ABC transporter ATP-binding protein Regulator
  JW646_RS17070 (JW646_17050) rcrQ 3527082..3528845 (+) 1764 WP_228415772.1 ABC transporter ATP-binding protein Regulator
  JW646_RS17075 (JW646_17055) - 3529103..3530440 (+) 1338 WP_228415773.1 protein kinase domain-containing protein -
  JW646_RS17080 (JW646_17060) - 3530804..3531301 (+) 498 WP_074916249.1 GNAT family N-acetyltransferase -
  JW646_RS17085 (JW646_17065) - 3531402..3532634 (+) 1233 WP_228415774.1 VanW family protein -
  JW646_RS17090 (JW646_17070) - 3532749..3533291 (+) 543 WP_228415775.1 NADH peroxidase -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64867.12 Da        Isoelectric Point: 6.5930

>NTDB_id=595348 JW646_RS17070 WP_228415772.1 3527082..3528845(+) (rcrQ) [Terrisporobacter hibernicus strain MCA3]
MLNKNKQKSKGSFGNLLAYMKKYSFALILAFIFAIGGSIITVISPDKLSEVTNLIIKGIVAGINIDKISSICLTLAGLYG
VSVVLSYLQGFIMATVTQKTTKELRSDISNKMNKLPLKYFDKTTVGDVLSRMTNDVDTIGQTLNQSIGTLVSAISLLLGS
LYMMTTTNITLTITAVLSTIIGFGLMMLIISKSQKYFEHQQRYLGEINGHIEEAYTGHSVMKVYNAGEETNEKFKILNDN
LKQSAWKSQFISGLMMPLMSFIGNFGYVTVCVVGAVLAFNNKISFGVIVAFMMYIRFFTQPLAQFAQAATSLQSTSAACK
RVFEFLQEEEMEDESNKNISLENVEGHVKFEHVKFGYDKDKLIIKDFSADIKSGQKVAIVGPTGAGKTTLVNLLMKFYDV
NSGTIKIDGVPIQSLSREKVHELFCMVLQDTWLFEGTIRENITYNKEDVSQSVIVSACKAVGVDHFIRTLPDGYDTVLDD
NTNLSAGQKQLITIARAMVKNAPLLILDEATSSVDTRTELLIQEAMDKLTVGKTSFVIAHRLSTIKNADVILVMKDGDII
ESGNHEELLSENGFYAELYNSQFEKAS

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=595348 JW646_RS17070 WP_228415772.1 3527082..3528845(+) (rcrQ) [Terrisporobacter hibernicus strain MCA3]
ATGCTTAATAAAAATAAACAAAAGTCAAAGGGAAGCTTTGGCAACTTATTGGCATATATGAAAAAATATAGTTTTGCATT
AATTTTAGCTTTTATATTTGCCATAGGTGGATCAATAATAACAGTTATAAGTCCAGATAAATTAAGTGAAGTTACAAATT
TGATTATAAAAGGAATAGTAGCTGGAATTAACATAGACAAGATATCGAGTATATGTTTAACATTAGCAGGATTATATGGT
GTTAGTGTTGTGTTATCTTATTTGCAAGGTTTTATAATGGCAACGGTAACACAAAAAACTACTAAAGAGTTAAGAAGTGA
TATATCTAATAAAATGAATAAATTACCATTAAAGTATTTTGATAAAACCACTGTTGGCGATGTTCTAAGTCGTATGACTA
ATGATGTGGATACAATAGGTCAAACTTTAAATCAAAGTATTGGGACTTTAGTAAGCGCTATATCCTTATTATTAGGTTCA
TTGTACATGATGACAACTACAAACATCACTTTAACAATTACAGCAGTATTATCTACAATAATTGGTTTTGGGTTAATGAT
GTTAATAATATCAAAATCTCAAAAATATTTCGAACATCAACAACGTTACCTTGGAGAAATAAATGGACATATAGAAGAAG
CTTATACTGGTCATAGTGTAATGAAAGTATATAACGCAGGGGAAGAAACAAATGAAAAGTTTAAAATATTAAATGATAAT
CTTAAACAAAGTGCATGGAAATCACAATTTATATCAGGTTTAATGATGCCTTTAATGTCGTTTATCGGTAACTTTGGATA
TGTAACAGTTTGTGTTGTAGGTGCAGTACTAGCCTTCAATAATAAAATAAGTTTTGGTGTAATAGTAGCATTTATGATGT
ATATTAGATTTTTTACACAACCCCTTGCTCAATTTGCTCAAGCAGCCACTTCTCTACAGTCAACATCAGCTGCATGTAAA
AGAGTATTTGAGTTTTTACAAGAAGAGGAAATGGAAGATGAAAGTAATAAAAACATATCTTTAGAAAATGTAGAAGGTCA
TGTTAAATTTGAACATGTTAAATTTGGATATGATAAAGATAAATTAATAATAAAAGATTTCTCTGCTGATATTAAATCAG
GACAAAAAGTTGCAATAGTCGGACCAACAGGAGCAGGTAAAACTACTTTAGTAAACCTATTAATGAAGTTTTACGATGTA
AATAGCGGAACAATAAAAATAGATGGAGTACCAATACAAAGTCTGAGTAGAGAAAAGGTACATGAGTTATTTTGCATGGT
ACTTCAAGACACATGGCTATTTGAAGGAACAATTAGAGAAAATATAACTTACAATAAAGAGGATGTGTCACAATCTGTTA
TAGTATCTGCTTGTAAAGCTGTTGGAGTAGATCACTTTATAAGAACTTTACCTGATGGGTATGACACCGTATTAGATGAT
AATACTAATTTATCTGCTGGTCAAAAACAGTTAATTACTATAGCAAGAGCAATGGTGAAAAATGCACCTCTATTAATACT
AGATGAGGCAACAAGTTCTGTAGATACTCGTACAGAATTATTAATACAAGAGGCAATGGATAAATTAACAGTAGGAAAAA
CTTCATTTGTTATAGCTCATAGACTATCAACTATAAAAAATGCTGATGTAATTTTAGTTATGAAAGATGGAGATATTATA
GAAAGTGGAAATCATGAAGAACTTTTAAGTGAAAATGGATTCTATGCAGAGCTTTATAATAGTCAATTTGAAAAAGCAAG
TTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(27-302)

ABC transporter (ABC_tran)

(365-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

58.824

98.467

0.579