Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   JW646_RS05605 Genome accession   NZ_CP081135
Coordinates   1169027..1169980 (-) Length   317 a.a.
NCBI ID   WP_074920037.1    Uniprot ID   -
Organism   Terrisporobacter hibernicus strain MCA3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1164027..1174980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW646_RS05585 (JW646_05595) - 1165318..1166043 (-) 726 WP_228416871.1 alpha/beta hydrolase -
  JW646_RS05590 (JW646_05600) - 1166230..1167183 (-) 954 WP_074920039.1 siderophore ABC transporter substrate-binding protein -
  JW646_RS05595 (JW646_05605) - 1167278..1168033 (-) 756 WP_228416872.1 ABC transporter ATP-binding protein -
  JW646_RS05600 (JW646_05610) - 1168030..1169037 (-) 1008 WP_270302495.1 iron chelate uptake ABC transporter family permease subunit -
  JW646_RS05605 (JW646_05615) ceuB 1169027..1169980 (-) 954 WP_074920037.1 ABC transporter permease Machinery gene
  JW646_RS05610 (JW646_05620) - 1170189..1170656 (-) 468 WP_083399440.1 metallophosphoesterase family protein -
  JW646_RS05615 (JW646_05625) - 1170741..1171628 (-) 888 WP_228416873.1 MerR family transcriptional regulator -
  JW646_RS05620 (JW646_05630) - 1171763..1173214 (-) 1452 WP_228416874.1 DEAD/DEAH box helicase -
  JW646_RS05625 (JW646_05635) - 1173318..1174685 (-) 1368 WP_148558306.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34515.57 Da        Isoelectric Point: 9.1683

>NTDB_id=595335 JW646_RS05605 WP_074920037.1 1169027..1169980(-) (ceuB) [Terrisporobacter hibernicus strain MCA3]
MKKRYLIIMLIGLSLVSIFLGAKNINIMNVLNGDQDAIHLMVVSRLPRLISILMAGSAMSICGLIMQQISQNKFVSPTTG
ATIDSAQLGIVTAMVLIPGATIMQKAMISFVFALAGTLIFMTFLRNLKVKSVIFVPLVGIMFGNIIGSITTYIGYEFEIM
QNVGSWMQGNFSMILKGNYELLYLAIPLMIVAFLFAHKFTVAGMGEDFATNLGLDYKKIVNLGLVIVSIVTVCVVITAGE
IPYIGLIVPNIVSLYKGDNVHENIWDTALFGAVFVLVCDIAARAIIYPYELSVGLTVGVIGSGIFLYLILRRKSYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=595335 JW646_RS05605 WP_074920037.1 1169027..1169980(-) (ceuB) [Terrisporobacter hibernicus strain MCA3]
ATGAAAAAAAGATATTTAATCATAATGTTAATTGGATTATCTTTAGTTTCTATATTTTTAGGAGCTAAAAATATAAATAT
AATGAATGTTTTAAATGGAGATCAAGATGCCATACATCTTATGGTGGTAAGTAGGCTTCCAAGATTAATAAGCATATTAA
TGGCAGGAAGTGCTATGAGTATATGTGGGTTAATAATGCAACAAATAAGTCAAAATAAATTTGTTTCTCCAACAACAGGG
GCCACAATAGATTCAGCTCAGTTGGGAATAGTTACAGCTATGGTTCTTATACCAGGAGCAACAATAATGCAAAAAGCTAT
GATATCTTTTGTATTTGCTTTGGCTGGAACATTAATTTTTATGACATTTTTAAGAAATTTGAAAGTTAAAAGTGTAATAT
TTGTACCACTAGTTGGTATAATGTTTGGAAATATAATAGGATCTATAACAACATACATAGGATATGAATTTGAGATAATG
CAAAATGTTGGCTCTTGGATGCAAGGTAACTTCTCCATGATTTTAAAGGGAAATTATGAATTATTATACTTAGCTATACC
CCTTATGATTGTAGCGTTTTTATTTGCTCATAAATTTACAGTGGCAGGCATGGGAGAAGACTTTGCAACAAACCTAGGTC
TTGATTACAAAAAAATAGTTAATCTTGGTCTTGTAATAGTTTCAATAGTTACAGTATGTGTAGTAATAACAGCAGGAGAA
ATTCCTTATATAGGATTAATTGTTCCAAATATAGTTTCTTTGTATAAAGGTGATAATGTTCATGAAAATATATGGGATAC
AGCCTTATTTGGAGCAGTATTTGTTTTAGTTTGTGATATAGCAGCTAGAGCAATAATTTATCCATATGAACTTTCTGTTG
GACTTACAGTTGGAGTTATAGGAAGTGGAATATTCCTTTATTTAATATTAAGGAGGAAGTCATATGCAAGTTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.201

98.738

0.486