Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   PAC13_RS12440 Genome accession   NZ_CP097557
Coordinates   2518356..2518970 (-) Length   204 a.a.
NCBI ID   WP_023091587.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain C1.3     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2513356..2523970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAC13_RS12415 (PAC13_12395) - 2513812..2514075 (+) 264 WP_003109484.1 DUF1653 domain-containing protein -
  PAC13_RS12420 (PAC13_12400) topA 2514166..2516772 (+) 2607 WP_003091201.1 type I DNA topoisomerase -
  PAC13_RS12425 (PAC13_12405) - 2516879..2517397 (+) 519 WP_003091199.1 DUF6586 family protein -
  PAC13_RS12430 (PAC13_12410) - 2517604..2517837 (+) 234 WP_003109483.1 hypothetical protein -
  PAC13_RS12435 (PAC13_12415) sulA 2517859..2518344 (-) 486 WP_003091197.1 SOS-induced cell division inhibitor SulA -
  PAC13_RS12440 (PAC13_12420) dinR/lexA 2518356..2518970 (-) 615 WP_023091587.1 transcriptional repressor LexA Regulator
  PAC13_RS12445 (PAC13_12425) psrA 2519202..2519903 (+) 702 WP_003091195.1 transcriptional regulator PsrA -
  PAC13_RS12450 (PAC13_12430) nagZ 2520105..2521103 (+) 999 WP_003118092.1 beta-N-acetylhexosaminidase -
  PAC13_RS12455 (PAC13_12435) - 2521115..2521852 (+) 738 WP_023091588.1 S-methyl-5'-thioinosine phosphorylase -
  PAC13_RS12460 (PAC13_12440) - 2521898..2522527 (-) 630 WP_003091190.1 CsiV family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22535.97 Da        Isoelectric Point: 6.4989

>NTDB_id=595306 PAC13_RS12440 WP_023091587.1 2518356..2518970(-) (dinR/lexA) [Pseudomonas aeruginosa strain C1.3]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPTFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=595306 PAC13_RS12440 WP_023091587.1 2518356..2518970(-) (dinR/lexA) [Pseudomonas aeruginosa strain C1.3]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAGGCGCTGGCACGCAAGG
GCGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCATGCCGCCAACGACGATGAG
GGCCTGCCGGTGATCGGACGGGTCGCCGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGGATCAA
TCCCACCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATCCTCGACG
GCGACCTCCTGGCCGTCCACGTCACCCGCGAAGCGCGCAACGGCCAGGTGGTGGTCGCGCGGATCGGCGAGGAGGTCACG
GTGAAACGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGACGCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(83-196)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387