Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   PAC13_RS01900 Genome accession   NZ_CP097557
Coordinates   407325..408704 (+) Length   459 a.a.
NCBI ID   WP_023092306.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain C1.3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 402325..413704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAC13_RS01880 (PAC13_01880) - 403162..403728 (-) 567 WP_003084491.1 hypothetical protein -
  PAC13_RS01885 (PAC13_01885) rsmD 403731..404327 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PAC13_RS01890 (PAC13_01890) - 404327..405814 (-) 1488 WP_023092305.1 M16 family metallopeptidase -
  PAC13_RS01895 (PAC13_01895) - 405807..407204 (-) 1398 WP_003084498.1 M16 family metallopeptidase -
  PAC13_RS01900 (PAC13_01900) pilA 407325..408704 (+) 1380 WP_023092306.1 signal recognition particle-docking protein FtsY Machinery gene
  PAC13_RS01905 (PAC13_01905) ftsE 408701..409372 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  PAC13_RS01910 (PAC13_01910) ftsX 409372..410379 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  PAC13_RS01915 (PAC13_01915) rpoH 410493..411347 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  PAC13_RS01920 (PAC13_01920) - 411412..412017 (+) 606 WP_003084511.1 hypothetical protein -
  PAC13_RS01925 (PAC13_01925) mtgA 412022..412753 (-) 732 WP_023092307.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  PAC13_RS01930 (PAC13_01930) - 412790..413167 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  PAC13_RS01935 (PAC13_01935) thiS 413270..413470 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 48776.21 Da        Isoelectric Point: 4.5033

>NTDB_id=595280 PAC13_RS01900 WP_023092306.1 407325..408704(+) (pilA) [Pseudomonas aeruginosa strain C1.3]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPPAP
APVAEAPLAGDEPASAEEHSPRSEAPVAQPEPILAAEPEPEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQG
LSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRP
VEQPLQVDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADS
ASVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVEL
TGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=595280 PAC13_RS01900 WP_023092306.1 407325..408704(+) (pilA) [Pseudomonas aeruginosa strain C1.3]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCCGCCG
ATGACGTAGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGCCGGCGCCG
GCGCCGGTTGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGTCCGAGGCGCCCGT
CGCGCAACCCGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGC
CCGTTGCGCCGCTGGCCGCCGCTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGG
CTGTCCAAGACCAGCGCCAGCATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGTCGCAAGGAAATCGACGACGACCTGCT
CGACGACATCGAGACGCGCCTGCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGC
GCGTGGCGCGCAAGGAGCTGGCCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCG
GTGGAGCAGCCGTTGCAGGTCGACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGAC
CACCACCATCGGCAAGCTGGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCG
CTGCCGCCGTGGAGCAGTTGCAGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCC
GCCTCGGTGATCTTCGACGCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCTT
GCATACCAAGGACAACCTGATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATG
AGGTCCTGCTGGTGCTCGACGCCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTG
ACCGGCCTGGCCCTGACCAAACTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCC
GATCCGCTATATCGGTGTCGGCGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCG
CAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(254-453)

SRP54-type protein, helical bundle domain (SRP54_N)

(169-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.126

94.771

0.447