Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   PAC13_RS00130 Genome accession   NZ_CP097557
Coordinates   26503..27528 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain C1.3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 21503..32528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAC13_RS00105 (PAC13_00105) - 21692..22009 (-) 318 WP_003097288.1 tetratricopeptide repeat protein -
  PAC13_RS00110 (PAC13_00110) trkA 22158..23531 (-) 1374 WP_003111375.1 Trk system potassium transporter TrkA -
  PAC13_RS00115 (PAC13_00115) rsmB 23558..24862 (-) 1305 WP_023092224.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PAC13_RS00120 (PAC13_00120) fmt 24859..25803 (-) 945 WP_009316076.1 methionyl-tRNA formyltransferase -
  PAC13_RS00125 (PAC13_00125) def 25858..26364 (-) 507 WP_003097293.1 peptide deformylase -
  PAC13_RS00130 (PAC13_00130) tsaP 26503..27528 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PAC13_RS00135 (PAC13_00135) dprA 27663..28751 (+) 1089 WP_023092225.1 DNA-processing protein DprA Machinery gene
  PAC13_RS00140 (PAC13_00140) - 28792..29349 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  PAC13_RS00145 (PAC13_00145) - 29359..30336 (-) 978 WP_023092226.1 NADPH:quinone reductase -
  PAC13_RS00150 (PAC13_00150) hemF 30527..31444 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  PAC13_RS00155 (PAC13_00155) aroE 31502..32326 (+) 825 WP_003097314.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=595277 PAC13_RS00130 WP_003097294.1 26503..27528(+) (tsaP) [Pseudomonas aeruginosa strain C1.3]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=595277 PAC13_RS00130 WP_003097294.1 26503..27528(+) (tsaP) [Pseudomonas aeruginosa strain C1.3]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCTATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTAGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393