Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K6J66_RS02170 Genome accession   NZ_AP018771
Coordinates   433543..434196 (-) Length   217 a.a.
NCBI ID   WP_006995324.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-II-8 isolate 10H27     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 428543..439196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J66_RS02170 (CHBNII8_04010) sxy/tfoX 433543..434196 (-) 654 WP_006995324.1 DNA transformation protein TfoX Regulator
  K6J66_RS02175 (CHBNII8_04020) recA 434569..435633 (+) 1065 WP_005654959.1 recombinase RecA Machinery gene
  K6J66_RS02180 (CHBNII8_04030) recX 435713..436171 (+) 459 WP_038439484.1 recombination regulator RecX -
  K6J66_RS02185 crcB 436168..436554 (-) 387 WP_005658943.1 fluoride efflux transporter CrcB -
  K6J66_RS02190 (CHBNII8_04050) - 436554..437372 (-) 819 WP_038439483.1 Cof-type HAD-IIB family hydrolase -
  K6J66_RS02195 (CHBNII8_04060) - 437775..438779 (+) 1005 WP_038439482.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 24987.35 Da        Isoelectric Point: 10.0171

>NTDB_id=59527 K6J66_RS02170 WP_006995324.1 433543..434196(-) (sxy/tfoX) [Haemophilus influenzae strain CHBN-II-8 isolate 10H27]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQVLRSNRLCRKLIILSIKQILEQKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=59527 K6J66_RS02170 WP_006995324.1 433543..434196(-) (sxy/tfoX) [Haemophilus influenzae strain CHBN-II-8 isolate 10H27]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGGTTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCAGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGTTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-107)

TfoX C-terminal domain (TfoX_C)

(121-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

99.078

100

0.991

Multiple sequence alignment