Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K3072_RS15840 Genome accession   NZ_CP081010
Coordinates   3261617..3262246 (-) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain 25POL     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3256617..3267246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3072_RS15825 (K3072_15825) helD 3256859..3258913 (-) 2055 WP_001443200.1 DNA helicase IV -
  K3072_RS15830 (K3072_15830) yccF 3259036..3259482 (+) 447 WP_001261236.1 YccF domain-containing protein -
  K3072_RS15835 (K3072_15835) yccS 3259492..3261654 (+) 2163 WP_000875041.1 YccS family putative transporter -
  K3072_RS15840 (K3072_15840) sxy/tfoX 3261617..3262246 (-) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  K3072_RS15845 (K3072_15845) sulA 3262465..3262974 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  K3072_RS15850 (K3072_15850) ompA 3263330..3264382 (+) 1053 WP_001528868.1 porin OmpA -
  K3072_RS15855 (K3072_15855) matP 3264460..3264912 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  K3072_RS15860 (K3072_15860) ycbZ 3265098..3266858 (+) 1761 WP_000156504.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=595119 K3072_RS15840 WP_000839136.1 3261617..3262246(-) (sxy/tfoX) [Escherichia coli strain 25POL]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=595119 K3072_RS15840 WP_000839136.1 3261617..3262246(-) (sxy/tfoX) [Escherichia coli strain 25POL]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99