Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   I635_RS23045 Genome accession   NC_021713
Coordinates   4141810..4142424 (-) Length   204 a.a.
NCBI ID   WP_020744950.1    Uniprot ID   -
Organism   Alteromonas mediterranea UM7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4136810..4147424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I635_RS18175 (I635_18300) - 4137472..4138698 (+) 1227 WP_015068278.1 EAL and HDOD domain-containing protein -
  I635_RS18180 (I635_18305) - 4138853..4140088 (+) 1236 WP_015068279.1 EAL and HDOD domain-containing protein -
  I635_RS18185 (I635_18310) ftsX 4140102..4141082 (-) 981 WP_015068280.1 permease-like cell division protein FtsX -
  I635_RS18190 (I635_18315) ftsE 4141079..4141783 (-) 705 WP_015068281.1 cell division ATP-binding protein FtsE -
  I635_RS23045 (I635_18320) pilA 4141810..4142424 (-) 615 WP_020744950.1 signal recognition particle-docking protein FtsY Machinery gene
  I635_RS23050 (I635_18325) - 4142424..4143011 (-) 588 WP_020744951.1 hypothetical protein -
  I635_RS18205 (I635_18330) rsmD 4143078..4143749 (+) 672 WP_020744952.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  I635_RS18210 (I635_18335) - 4143838..4144416 (-) 579 WP_015068284.1 YjaG family protein -
  I635_RS18215 (I635_18340) - 4144417..4145019 (-) 603 WP_012519853.1 YhgN family NAAT transporter -
  I635_RS18220 (I635_18345) - 4145476..4145658 (+) 183 WP_012519852.1 hypothetical protein -
  I635_RS18225 (I635_18350) pepB 4145788..4147068 (-) 1281 WP_015068285.1 aminopeptidase PepB -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 21890.06 Da        Isoelectric Point: 5.8317

>NTDB_id=59511 I635_RS23045 WP_020744950.1 4141810..4142424(-) (pilA) [Alteromonas mediterranea UM7]
MVGVNGVGKTTTIGKLAKQFQQQGKKVMLAAGDTFRAAAVEQLQVWGERNDIPVIAQHTGADSASVLYDALEAAKSRGTD
ILIADTAGRLQNKNNLMEELKKVVRVMKKINPNAPHEVMLTLDAGTGQNAVSQAKLFNEAVGLTGITLTKLDGTAKGGVI
FSIADKFKIPIRYIGVGESIDDLRQFDGQEFIDALFSEMEAPES

Nucleotide


Download         Length: 615 bp        

>NTDB_id=59511 I635_RS23045 WP_020744950.1 4141810..4142424(-) (pilA) [Alteromonas mediterranea UM7]
ATGGTGGGCGTAAATGGCGTAGGTAAAACTACGACTATTGGTAAGCTGGCTAAGCAGTTTCAGCAGCAGGGCAAAAAAGT
GATGCTTGCTGCAGGTGATACGTTCAGAGCCGCAGCTGTAGAGCAGCTTCAGGTATGGGGAGAACGCAACGATATTCCGG
TTATCGCGCAGCATACGGGGGCAGATAGTGCGTCGGTACTTTACGATGCCCTAGAAGCCGCGAAGTCTCGTGGAACCGAT
ATCTTAATTGCTGATACTGCCGGGCGCTTACAGAACAAAAACAACTTGATGGAAGAGCTTAAGAAAGTGGTTCGCGTAAT
GAAGAAGATTAATCCAAATGCGCCCCACGAAGTGATGCTAACGTTAGACGCCGGAACCGGCCAAAACGCAGTGAGCCAAG
CCAAGTTATTCAACGAGGCAGTAGGCCTAACGGGCATTACGCTTACTAAGTTAGATGGTACAGCGAAAGGTGGTGTTATA
TTCTCTATTGCCGATAAGTTCAAAATTCCTATAAGGTATATTGGTGTAGGTGAGAGCATCGACGATTTGCGCCAGTTCGA
CGGGCAAGAATTTATCGATGCATTGTTTAGCGAAATGGAAGCACCTGAAAGCTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(1-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

63.265

96.078

0.608

Multiple sequence alignment