Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   M8Z32_RS02860 Genome accession   NZ_CP097555
Coordinates   612545..614542 (+) Length   665 a.a.
NCBI ID   WP_031635684.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain B1.2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 607545..619542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8Z32_RS02840 (M8Z32_02840) - 607781..608524 (-) 744 WP_016852398.1 metallophosphoesterase -
  M8Z32_RS02845 (M8Z32_02845) - 608729..610033 (+) 1305 WP_016252912.1 ferric reductase-like transmembrane domain-containing protein -
  M8Z32_RS02850 (M8Z32_02850) metK 610091..611281 (-) 1191 WP_003084948.1 methionine adenosyltransferase -
  M8Z32_RS02855 (M8Z32_02855) - 611297..612298 (-) 1002 WP_003113231.1 ArsR/SmtB family transcription factor -
  M8Z32_RS02860 (M8Z32_02860) recP/tkt 612545..614542 (+) 1998 WP_031635684.1 transketolase Machinery gene
  M8Z32_RS02865 (M8Z32_02865) - 614542..615606 (+) 1065 WP_043089517.1 hypothetical protein -
  M8Z32_RS02870 (M8Z32_02870) otnI 615587..616384 (-) 798 WP_003113230.1 2-oxo-tetronate isomerase -
  M8Z32_RS02875 (M8Z32_02875) epd 616599..617660 (+) 1062 WP_003084958.1 erythrose-4-phosphate dehydrogenase -
  M8Z32_RS02880 (M8Z32_02880) - 617666..618829 (+) 1164 WP_003101603.1 phosphoglycerate kinase -
  M8Z32_RS02885 (M8Z32_02885) - 618902..619102 (+) 201 WP_003084961.1 hypothetical protein -

Sequence

Protein


Download         Length: 665 a.a.        Molecular weight: 72148.25 Da        Isoelectric Point: 5.0222

>NTDB_id=595086 M8Z32_RS02860 WP_031635684.1 612545..614542(+) (recP/tkt) [Pseudomonas aeruginosa strain B1.2]
MPSRRERANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDYMQHNPSNPQWANRDRFVLSNGHGSMLIYSLLHLTGY
DLGIEDLKNFRQLNSRTPGHPEYGYTAGVETTTGPLGQGIANAVGMALAEKVLAAQFNRDGHAVVDHYTYAFLGDGCMME
GISHEVASLAGTLRLNKLIAFYDDNGISIDGEVHGWFTDDTPKRFEAYGWQVIRNVDGHDADEIKTAIDTARKSDQPTLI
CCKTVIGFGSPNKQGKEECHGAPLGADEIAATRAALGWEHAPFEIPAQIYAEWDAKESGAAQEAEWNKRFAAYQAAHPEL
AAELLRRLKGELPADFAEKAAAYVADVANKGETIASRKASQNALNAFGPLLPELLGGSADLAGSNLTLWKGCKGVSADDA
AGNYVFYGVREFGMSAIMNGVALHGGFIPYGATFLIFMEYARNAVRMSALMKQRVLYVFTHDSIGLGEDGPTHQPIEQLA
SLRLTPNLDTWRPADAVESAVAWKHAIERADGPSALIFSRQNLPHQARDVAQVADIARGGYVLKDCAGEPELILIATGSE
VGLAVQAYDKLSEQGRKVRVVSMPCTSVYEQQDESYKQSVLPVEVGARIAIEAAHADYWYKYVGLDGRIIGMTSFGESAP
APALFEHFGFTLDNVLAVAEELLED

Nucleotide


Download         Length: 1998 bp        

>NTDB_id=595086 M8Z32_RS02860 WP_031635684.1 612545..614542(+) (recP/tkt) [Pseudomonas aeruginosa strain B1.2]
ATGCCCAGCCGTCGTGAGCGAGCCAATGCCATCCGTGCACTGAGCATGGATGCCGTGCAGAAAGCCAACAGCGGCCACCC
GGGCGCCCCGATGGGCATGGCCGATATCGCCGAGGTCCTCTGGCGCGACTACATGCAGCACAACCCGAGCAACCCGCAGT
GGGCCAACCGCGACCGCTTCGTGCTGTCCAACGGCCACGGCTCGATGCTGATCTACTCCCTGCTGCACCTCACCGGGTAC
GACCTCGGCATCGAGGACCTGAAGAACTTCCGCCAGCTCAACTCGCGCACCCCGGGCCACCCGGAGTACGGCTACACCGC
CGGCGTCGAGACCACCACCGGTCCGCTCGGCCAGGGCATCGCCAATGCGGTGGGCATGGCGCTGGCGGAGAAGGTCCTGG
CCGCCCAGTTCAACCGCGACGGCCACGCGGTAGTCGACCACTACACCTACGCCTTCCTCGGCGACGGCTGCATGATGGAA
GGCATTTCCCATGAGGTCGCCTCGCTGGCCGGCACCCTGCGCCTGAACAAGCTGATCGCCTTCTACGACGACAACGGCAT
TTCCATCGACGGCGAGGTCCACGGCTGGTTCACCGACGACACCCCGAAGCGCTTCGAGGCCTATGGCTGGCAAGTGATCC
GCAACGTCGACGGGCATGACGCCGACGAGATCAAGACCGCCATCGATACCGCGCGCAAGAGCGACCAGCCGACCCTGATC
TGCTGCAAGACCGTGATCGGTTTCGGCTCGCCGAACAAACAGGGCAAGGAAGAGTGCCACGGCGCGCCGCTGGGCGCCGA
CGAGATCGCCGCGACCCGCGCCGCGCTGGGCTGGGAGCACGCTCCGTTCGAGATCCCGGCGCAGATCTACGCCGAGTGGG
ACGCCAAGGAATCCGGCGCCGCCCAGGAAGCCGAGTGGAACAAGCGTTTCGCCGCCTACCAGGCTGCCCATCCGGAACTG
GCCGCCGAATTGCTGCGCCGCCTGAAGGGCGAGCTGCCGGCCGACTTCGCCGAGAAGGCCGCGGCCTACGTCGCCGACGT
CGCCAACAAGGGCGAGACCATCGCCAGCCGCAAGGCCAGCCAGAACGCGCTGAACGCCTTCGGCCCGCTGCTGCCGGAGC
TGCTCGGCGGTTCCGCCGACCTGGCCGGCTCCAACCTGACCCTGTGGAAGGGCTGCAAGGGCGTCAGCGCCGACGACGCC
GCCGGCAACTACGTGTTCTACGGCGTGCGCGAATTCGGCATGAGCGCGATCATGAATGGCGTCGCCCTGCACGGCGGTTT
CATTCCCTACGGTGCGACCTTCCTGATCTTCATGGAATACGCGCGCAACGCCGTGCGCATGTCCGCACTGATGAAGCAGC
GCGTGCTCTACGTGTTCACCCACGACTCCATCGGCCTCGGCGAGGACGGCCCGACCCACCAGCCGATCGAACAACTGGCC
AGCCTGCGCCTGACCCCGAACCTGGACACCTGGCGCCCGGCCGACGCGGTCGAGTCGGCGGTGGCCTGGAAGCACGCCAT
CGAGCGTGCCGACGGTCCGTCCGCGCTGATCTTCTCCCGCCAGAACCTGCCGCACCAGGCGCGCGACGTCGCCCAGGTGG
CCGACATCGCCCGCGGCGGTTACGTGCTGAAGGACTGCGCCGGCGAGCCGGAACTGATCCTGATCGCCACCGGTTCGGAA
GTCGGCCTGGCCGTGCAGGCCTACGACAAGCTCAGCGAGCAGGGCCGCAAGGTCCGCGTGGTATCGATGCCATGCACCAG
CGTCTACGAGCAGCAGGACGAGTCCTACAAGCAGTCCGTGCTGCCGGTGGAAGTCGGCGCGCGCATCGCCATCGAGGCCG
CCCATGCCGACTACTGGTACAAGTACGTCGGTCTCGACGGGCGCATCATCGGCATGACCAGCTTCGGCGAGTCGGCGCCG
GCCCCGGCGCTGTTCGAGCACTTCGGCTTCACCCTGGACAACGTCCTGGCGGTGGCCGAGGAGCTGCTGGAAGACTGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(5-333)

Transketolase, C-terminal domain (Transketolase_C)

(540-655)

Transketolase, pyrimidine binding domain (Transket_pyr)

(353-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.333

99.248

0.48