Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   M8Z32_RS00100 Genome accession   NZ_CP097555
Coordinates   21251..22276 (+) Length   341 a.a.
NCBI ID   WP_043089530.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain B1.2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 16251..27276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8Z32_RS00075 (M8Z32_00075) - 16439..16756 (-) 318 WP_003120685.1 tetratricopeptide repeat protein -
  M8Z32_RS00080 (M8Z32_00080) trkA 16905..18278 (-) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  M8Z32_RS00085 (M8Z32_00085) rsmB 18306..19610 (-) 1305 WP_016561456.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  M8Z32_RS00090 (M8Z32_00090) fmt 19607..20551 (-) 945 WP_010793609.1 methionyl-tRNA formyltransferase -
  M8Z32_RS00095 (M8Z32_00095) def 20606..21112 (-) 507 WP_003107059.1 peptide deformylase -
  M8Z32_RS00100 (M8Z32_00100) tsaP 21251..22276 (+) 1026 WP_043089530.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  M8Z32_RS00105 (M8Z32_00105) dprA 22411..23499 (+) 1089 WP_003118479.1 DNA-processing protein DprA Machinery gene
  M8Z32_RS00110 (M8Z32_00110) - 23540..24097 (+) 558 WP_016561457.1 L-threonylcarbamoyladenylate synthase -
  M8Z32_RS00115 (M8Z32_00115) - 24107..25084 (-) 978 WP_003111202.1 NADPH:quinone reductase -
  M8Z32_RS00120 (M8Z32_00120) hemF 25275..26192 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  M8Z32_RS00125 (M8Z32_00125) aroE 26250..27074 (+) 825 WP_003111201.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37555.98 Da        Isoelectric Point: 9.3358

>NTDB_id=595075 M8Z32_RS00100 WP_043089530.1 21251..22276(+) (tsaP) [Pseudomonas aeruginosa strain B1.2]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTGAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=595075 M8Z32_RS00100 WP_043089530.1 21251..22276(+) (tsaP) [Pseudomonas aeruginosa strain B1.2]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACACTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTATCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGATGAGA
AGACCTTCACCGGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCT
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393