Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   M8Y68_RS08350 Genome accession   NZ_CP097430
Coordinates   1756065..1757492 (-) Length   475 a.a.
NCBI ID   WP_000980605.1    Uniprot ID   -
Organism   Escherichia coli strain C288     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1751065..1762492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8Y68_RS08320 (M8Y68_08320) yeeZ 1751120..1751944 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  M8Y68_RS08325 (M8Y68_08325) yeeY 1751990..1752919 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  M8Y68_RS08330 (M8Y68_08330) yoeI 1753134..1753196 (+) 63 WP_010723108.1 membrane protein YoeI -
  M8Y68_RS08335 (M8Y68_08335) plaP 1753186..1754544 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  M8Y68_RS08340 (M8Y68_08340) tsuA 1754723..1755781 (+) 1059 WP_095516935.1 thiosulfate utilization transporter TsuA/YeeE -
  M8Y68_RS08345 (M8Y68_08345) tsuB 1755795..1756022 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  M8Y68_RS08350 (M8Y68_08350) sbcB 1756065..1757492 (-) 1428 WP_000980605.1 exodeoxyribonuclease I Machinery gene
  M8Y68_RS08355 (M8Y68_08355) dacD 1757701..1758867 (+) 1167 WP_095516934.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  M8Y68_RS08360 (M8Y68_08360) sbmC 1758986..1759459 (+) 474 WP_001105407.1 DNA gyrase inhibitor SbmC -
  M8Y68_RS08365 (M8Y68_08365) yeeA 1759657..1760715 (+) 1059 WP_001200895.1 FUSC family protein -
  M8Y68_RS08370 (M8Y68_08370) tmaR 1760887..1761216 (+) 330 WP_000450409.1 DUF496 family protein -
  M8Y68_RS08375 (M8Y68_08375) - 1761317..1761499 (-) 183 WP_024198358.1 EutP/PduV family microcompartment system protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.69 Da        Isoelectric Point: 5.3480

>NTDB_id=595028 M8Y68_RS08350 WP_000980605.1 1756065..1757492(-) (sbcB) [Escherichia coli strain C288]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
NRLGINRQHCLDNLKILRENPQVREEVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=595028 M8Y68_RS08350 WP_000980605.1 1756065..1757492(-) (sbcB) [Escherichia coli strain C288]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
AACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAGAAGT
GGTGGCGATATTTGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579