Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K2O51_RS22435 Genome accession   NZ_CP080767
Coordinates   2157595..2158959 (-) Length   454 a.a.
NCBI ID   WP_041679630.1    Uniprot ID   -
Organism   Cupriavidus pinatubonensis strain HN-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2152595..2163959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K2O51_RS22415 (K2O51_22415) - 2153102..2154079 (-) 978 WP_220630737.1 MurR/RpiR family transcriptional regulator -
  K2O51_RS22420 (K2O51_22420) - 2154345..2156276 (+) 1932 WP_140950845.1 ATP-binding cassette domain-containing protein -
  K2O51_RS22425 (K2O51_22425) - 2156368..2156853 (-) 486 WP_011298094.1 disulfide bond formation protein B -
  K2O51_RS22430 (K2O51_22430) - 2157019..2157591 (-) 573 WP_220630738.1 GNAT family N-acetyltransferase -
  K2O51_RS22435 (K2O51_22435) radA 2157595..2158959 (-) 1365 WP_041679630.1 DNA repair protein RadA Machinery gene
  K2O51_RS22440 (K2O51_22440) alr 2159050..2160171 (-) 1122 WP_011298097.1 alanine racemase -
  K2O51_RS22445 (K2O51_22445) lplT 2160648..2161967 (+) 1320 WP_011298098.1 lysophospholipid transporter LplT -
  K2O51_RS22450 (K2O51_22450) - 2161984..2163102 (-) 1119 WP_220630739.1 DUF1853 family protein -
  K2O51_RS22455 (K2O51_22455) - 2163083..2163940 (-) 858 WP_011298100.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48454.80 Da        Isoelectric Point: 7.2043

>NTDB_id=594836 K2O51_RS22435 WP_041679630.1 2157595..2158959(-) (radA) [Cupriavidus pinatubonensis strain HN-2]
MAKTKTVYTCTECGGTTPRWAGQCPHCQQWNTLVETVAEGSTAGKRFQPLAASATVRKLSEIDAADVPRFSSGIDEFDRV
LGGGLVAGGVVLIGGDPGIGKSTLLLQALANLAGQRRVLYVSGEESGAQIALRAQRLGVESPTLGLLAEIQLEKIQATLE
AEKPEVAVIDSIQTLYSEVLTSAPGSVAQVRECAAQLTRIAKSSGITIILVGHVTKEGNLAGPRVLEHIVDTVLYFEGDT
HSSHRLIRAFKNRFGAVNELGVFAMTERGLRGISNPSALFLSQHEEMVPGSCVLVTQEGTRPLLVEVQALVDTANVPNPR
RLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLSIHSSMRNKPLPRGLVVFGEVGLAGEIR
PSPRGQERLKEAAKLGFTQAVIPKANAPKQKIDGLEVIAVERIEQAIDRVRHLD

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=594836 K2O51_RS22435 WP_041679630.1 2157595..2158959(-) (radA) [Cupriavidus pinatubonensis strain HN-2]
TTGGCCAAGACCAAGACCGTCTACACCTGTACCGAATGTGGCGGCACCACGCCGCGCTGGGCCGGCCAGTGCCCGCACTG
CCAGCAGTGGAACACGCTGGTCGAGACCGTTGCGGAAGGCAGCACGGCGGGCAAGCGCTTCCAGCCGCTGGCGGCATCGG
CCACGGTGCGCAAGCTTTCCGAGATCGACGCTGCCGATGTCCCGCGTTTTTCGAGCGGGATCGATGAATTCGACCGGGTG
CTCGGCGGCGGGCTGGTTGCGGGCGGGGTGGTGCTGATCGGTGGCGATCCGGGTATTGGCAAGTCGACGCTGCTGTTGCA
GGCACTGGCCAACCTGGCCGGACAGCGGCGCGTGCTCTATGTGAGTGGCGAAGAATCTGGCGCGCAGATCGCATTGCGCG
CGCAGCGCCTCGGCGTGGAGAGCCCGACGCTCGGACTGCTCGCCGAAATCCAGCTCGAGAAGATCCAGGCCACGCTGGAG
GCGGAAAAGCCCGAGGTCGCGGTGATCGACTCGATCCAGACGCTGTACTCGGAGGTGCTGACCTCGGCACCGGGGTCGGT
CGCGCAGGTGCGTGAGTGTGCGGCGCAACTGACACGCATTGCCAAGAGCAGCGGTATCACCATCATCCTGGTCGGCCACG
TGACCAAGGAAGGCAACCTGGCCGGTCCGCGCGTGCTCGAGCACATCGTCGATACCGTGCTGTATTTCGAAGGCGACACC
CATTCTTCGCACCGGTTGATCCGCGCGTTCAAGAATCGTTTCGGTGCTGTCAATGAACTGGGCGTGTTTGCAATGACGGA
GCGCGGCCTGCGCGGCATCAGCAATCCGTCGGCGCTGTTCCTGTCGCAGCACGAAGAGATGGTGCCGGGGTCTTGCGTGC
TGGTAACGCAAGAAGGCACACGGCCGCTGCTGGTCGAAGTCCAGGCGTTGGTCGACACCGCCAACGTGCCGAACCCGCGA
CGACTGGCCGTGGGCCTTGAACAAAACCGGCTCGCGATGCTGCTGGCCGTGCTGCACCGGCATGCCGGTATTGCCTGCTT
TGACCAGGACGTGTTCCTGAACGCTGTGGGCGGCGTGAAGATTACCGAGCCCGCGGCCGACCTGGCCGTGCTGCTGTCGA
TCCACTCGTCGATGCGCAACAAGCCGTTGCCGCGCGGGCTGGTGGTGTTCGGCGAAGTCGGGCTGGCCGGCGAAATTCGC
CCGAGTCCGCGCGGGCAGGAGCGCCTGAAGGAAGCCGCGAAGCTGGGCTTCACGCAGGCTGTGATCCCCAAGGCCAATGC
GCCCAAGCAGAAGATCGACGGACTCGAGGTGATCGCAGTCGAGCGCATCGAACAGGCGATCGATCGCGTGCGCCATCTCG
ACTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(62-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50

99.559

0.498
  radA Streptococcus mitis SK321

46.696

100

0.467
  radA Streptococcus pneumoniae D39

46.593

100

0.467
  radA Streptococcus pneumoniae TIGR4

46.593

100

0.467
  radA Streptococcus pneumoniae R6

46.593

100

0.467
  radA Streptococcus pneumoniae Rx1

46.593

100

0.467
  radA Streptococcus mitis NCTC 12261

46.374

100

0.465