Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   K2O51_RS17895 Genome accession   NZ_CP080767
Coordinates   1168397..1170799 (+) Length   800 a.a.
NCBI ID   WP_220631457.1    Uniprot ID   -
Organism   Cupriavidus pinatubonensis strain HN-2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1163397..1175799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K2O51_RS17875 (K2O51_17875) - 1164276..1165376 (-) 1101 WP_011297257.1 hypothetical protein -
  K2O51_RS17880 (K2O51_17880) - 1165482..1166732 (+) 1251 WP_011297258.1 lipoprotein-releasing ABC transporter permease subunit -
  K2O51_RS17885 (K2O51_17885) lolD 1166725..1167459 (+) 735 WP_011297259.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  K2O51_RS17890 (K2O51_17890) - 1167472..1168305 (+) 834 WP_011297260.1 TatD family hydrolase -
  K2O51_RS17895 (K2O51_17895) comA 1168397..1170799 (+) 2403 WP_220631457.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K2O51_RS17900 (K2O51_17900) - 1170812..1171741 (-) 930 WP_245001925.1 SIS domain-containing protein -
  K2O51_RS17905 (K2O51_17905) edd 1171977..1173848 (+) 1872 WP_011297263.1 phosphogluconate dehydratase -
  K2O51_RS17910 (K2O51_17910) - 1173994..1174500 (+) 507 WP_220631458.1 gluconokinase -

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 86240.95 Da        Isoelectric Point: 10.1737

>NTDB_id=594832 K2O51_RS17895 WP_220631457.1 1168397..1170799(+) (comA) [Cupriavidus pinatubonensis strain HN-2]
MRLILLGFVVGCWALQRQGSLPAYSALGFASAALAILVVWLVRYGGNKRLAHGLAILVAVSVGFCWAAWRAHSRMGDWLP
TQLEARDIEVTGVVSGLPAELSPGARFAFTVEAAQHGEHVPARVQLSWREATPELRPGQRYTFTVRLRRPRGLANPHGFD
YAYWLLAQGYGATGYVRTVHNGPQEAAHERIAWRIGAQRATLRDHIRAALPADARFAPVLVALVVGDQRGIDGDDWLLFN
RTGIGHLVSISGLHITMIAGFAAGLVQWAWRHSFGLGRRLRRPLPLWCPARQAALVAAVLAGLGYGLIAGLQIPALRTVA
MLSIAALAAWSARTPPASMVLAWAAFVALLLDPWAVTQPGFWLSFGAVGVIFLAASRPHVPVRGWWPRIRAALLSAARTQ
WAVTVGLVPLTLLLFRQFPVISPIANAVAIPVVSMFVTPLALLGAVVPMTLAAPLLVLAHGALAWLVLVLQWLASSEWAV
WETAQAGVLETVLALAGTLILLAPAVFGLRIRLHGVLLILPMVVARGDDVAHGEFRAAMLDVGQGTAVLVQTRAHALLYD
AGPAYASGGSAGAQVIVPYLRAFGIRRLDHLMVSHEDADHAGGARHVIDAVSVDIRSTAAPAGHALLGKADWVACVAGEH
WEWDGVHFTVLHPDAGQSRDAAIGSNARSCVLRVDNGRHSVLLTGDIGKAEERELVERIPAERLRADVLVVPHHGSGTSS
SSEWLAAVSPGAAVFQLGYRNRYQHPRADVWQRYGDAGILRYRTDETGAVTMVTQGGAYSMEAFRQTERRYWREAPAAPR

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=594832 K2O51_RS17895 WP_220631457.1 1168397..1170799(+) (comA) [Cupriavidus pinatubonensis strain HN-2]
GTGCGCCTGATCCTGCTGGGTTTCGTGGTCGGCTGCTGGGCCTTGCAGCGGCAGGGCTCGCTGCCTGCGTACAGCGCGCT
GGGTTTCGCCTCTGCCGCACTCGCAATCCTCGTCGTCTGGCTGGTCCGGTACGGAGGCAACAAGCGGCTCGCACACGGAC
TCGCGATTCTGGTGGCGGTCTCAGTGGGCTTCTGCTGGGCGGCGTGGCGCGCGCATTCGCGCATGGGCGACTGGCTGCCC
ACGCAGCTGGAGGCGCGCGATATCGAGGTGACCGGCGTGGTCTCCGGCCTGCCTGCCGAACTGTCGCCCGGCGCCCGCTT
TGCCTTCACGGTCGAGGCCGCGCAGCACGGCGAACACGTGCCGGCCCGCGTGCAGCTGAGCTGGCGCGAGGCCACGCCTG
AGCTACGCCCCGGCCAGCGCTACACCTTCACGGTGCGCTTGCGTCGTCCGCGCGGGCTCGCCAATCCCCACGGTTTCGAC
TACGCATACTGGCTGCTGGCGCAAGGCTATGGCGCGACGGGTTACGTGCGTACCGTCCACAACGGGCCGCAGGAAGCGGC
GCACGAACGGATCGCATGGCGCATCGGGGCGCAACGTGCCACGTTGCGCGACCACATCCGCGCCGCGCTGCCCGCGGACG
CCCGTTTCGCGCCGGTGCTTGTGGCGCTCGTCGTCGGCGACCAGCGCGGCATCGATGGCGATGATTGGCTGCTGTTCAAT
CGCACTGGCATCGGCCACCTCGTCAGCATTTCCGGACTCCATATCACGATGATCGCGGGCTTTGCCGCGGGCCTGGTGCA
ATGGGCGTGGCGGCATTCATTCGGGTTAGGCCGCCGTCTGCGCCGGCCGTTGCCGCTGTGGTGTCCGGCGCGGCAGGCGG
CGCTCGTTGCGGCAGTGCTCGCGGGGCTGGGATACGGCCTGATCGCCGGTCTGCAAATTCCGGCACTGCGTACGGTGGCC
ATGCTGTCCATCGCCGCGCTGGCCGCGTGGAGCGCTCGGACGCCACCGGCATCGATGGTGCTCGCGTGGGCGGCTTTCGT
CGCGCTGCTGCTGGACCCGTGGGCGGTGACGCAACCGGGGTTCTGGTTGTCGTTCGGTGCGGTCGGCGTGATCTTCCTGG
CGGCATCGCGTCCTCACGTGCCGGTGCGCGGGTGGTGGCCACGCATACGCGCGGCGCTCCTCTCCGCAGCGCGCACGCAA
TGGGCTGTAACGGTCGGTCTGGTGCCGCTGACGTTGCTGCTCTTCCGGCAGTTTCCGGTCATTTCCCCGATTGCGAATGC
TGTTGCCATTCCCGTGGTCAGCATGTTCGTCACGCCGCTTGCGCTGCTCGGTGCGGTGGTACCGATGACGCTGGCCGCGC
CATTGCTGGTGTTGGCGCATGGGGCGCTGGCGTGGCTGGTGCTTGTGCTGCAGTGGCTGGCATCGTCCGAGTGGGCGGTC
TGGGAGACGGCGCAGGCCGGCGTGCTGGAAACGGTGTTGGCGCTGGCTGGCACGCTCATCCTGCTGGCACCTGCCGTGTT
CGGATTGCGCATACGGCTGCACGGGGTGCTGTTGATCCTGCCTATGGTGGTCGCGCGCGGCGACGATGTGGCGCATGGCG
AATTCCGGGCCGCGATGCTCGATGTCGGGCAGGGCACCGCGGTGCTGGTGCAAACGCGCGCGCACGCCTTGCTTTACGAC
GCCGGGCCAGCCTATGCCTCCGGGGGCAGCGCCGGAGCGCAGGTCATCGTGCCCTATCTGCGCGCGTTCGGCATACGCAG
GCTCGACCATTTGATGGTCAGCCACGAAGATGCCGACCACGCGGGTGGCGCGCGCCACGTCATCGATGCCGTGTCCGTCG
ATATCCGGTCCACGGCCGCGCCGGCCGGCCATGCGCTGCTTGGCAAGGCCGATTGGGTGGCATGCGTGGCGGGCGAGCAC
TGGGAGTGGGATGGCGTCCATTTCACGGTGCTGCATCCCGACGCCGGGCAATCGCGCGATGCGGCGATCGGGAGCAATGC
GCGCAGCTGCGTACTGCGCGTGGACAACGGCCGCCATAGCGTGCTGCTGACTGGCGATATCGGCAAGGCGGAAGAGCGTG
AACTGGTCGAGCGGATACCTGCGGAGAGGCTGCGTGCCGATGTCCTAGTCGTGCCGCACCATGGCAGCGGCACCTCATCC
AGTTCCGAGTGGCTCGCGGCCGTCAGTCCCGGCGCGGCGGTGTTCCAACTTGGCTACCGCAACCGTTACCAGCATCCGCG
CGCCGATGTCTGGCAGCGCTATGGCGATGCCGGCATCCTGCGCTACCGCACGGACGAAACTGGCGCGGTCACGATGGTCA
CGCAGGGCGGGGCCTACTCGATGGAAGCGTTTCGCCAGACCGAGCGTCGCTACTGGCGTGAGGCGCCTGCGGCGCCGCGC
TAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(223-503)

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-734)

Domain of unknown function (DUF4131) (DUF4131)

(25-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

46.42

100

0.486