Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   M6G44_RS08480 Genome accession   NZ_CP097377
Coordinates   1808731..1809720 (+) Length   329 a.a.
NCBI ID   WP_012478568.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain GD2107     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1803731..1814720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M6G44_RS08460 (M6G44_08460) - 1804358..1805326 (-) 969 WP_005618127.1 mannose/fructose/sorbose PTS transporter subunit IIA -
  M6G44_RS08465 (M6G44_08465) - 1805496..1806845 (-) 1350 WP_005618129.1 GntP family permease -
  M6G44_RS08470 (M6G44_08470) - 1807023..1807538 (+) 516 WP_005618131.1 gluconokinase -
  M6G44_RS08475 (M6G44_08475) gntR 1807610..1808608 (-) 999 WP_005618133.1 gluconate operon transcriptional repressor GntR -
  M6G44_RS08480 (M6G44_08480) cytR 1808731..1809720 (+) 990 WP_012478568.1 substrate-binding domain-containing protein Regulator
  M6G44_RS08485 (M6G44_08485) rbsD 1809841..1810260 (+) 420 WP_005599106.1 D-ribose pyranase -
  M6G44_RS08490 (M6G44_08490) rbsA 1810273..1811754 (+) 1482 WP_005618138.1 ribose ABC transporter ATP-binding protein RbsA -
  M6G44_RS08495 (M6G44_08495) rbsC 1811811..1812770 (+) 960 WP_005618141.1 ribose ABC transporter permease -
  M6G44_RS08500 (M6G44_08500) rbsB 1812794..1813666 (+) 873 WP_005599112.1 ribose ABC transporter substrate-binding protein RbsB -
  M6G44_RS08505 (M6G44_08505) rbsK 1813739..1814650 (+) 912 WP_005599115.1 ribokinase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 36918.24 Da        Isoelectric Point: 6.7245

>NTDB_id=594814 M6G44_RS08480 WP_012478568.1 1808731..1809720(+) (cytR) [Actinobacillus pleuropneumoniae strain GD2107]
MATMKDIARIAGVSTSTVSHVINNSRFVSDEIRQRIEKVVAELNYTPSLVARSLKVKETNTIGMLVTTSSNPFFAEVVRH
VERYCERHNYHLILVNTDGNSTNLAQHLARLLRKQVDGLLLMCSEPQDLDESVMANIHLPMVVIDWWQQALKADNVHENS
ELGGYLATKALIDAGYTEIAVITGEQSKSHTLNRLQGYKRAILEANLPIRPEWIVEGHFDYQAGLEYASRLLALNSRPQA
IFAMSDSIAIGVYQAAWQAGLRIPQDIAVIGYDNIELAQYLSPPLSTIHQPKARLAKNAVEQLIARIHQPDKAYQEIELT
PELVVRRSF

Nucleotide


Download         Length: 990 bp        

>NTDB_id=594814 M6G44_RS08480 WP_012478568.1 1808731..1809720(+) (cytR) [Actinobacillus pleuropneumoniae strain GD2107]
ATGGCAACAATGAAAGATATAGCTCGGATTGCGGGCGTTTCCACTTCCACCGTCTCCCACGTGATCAATAATTCTCGCTT
TGTGAGTGATGAAATTCGTCAGCGGATCGAAAAAGTGGTGGCGGAACTGAATTATACGCCTTCGTTAGTTGCGCGCAGCT
TGAAAGTAAAAGAAACCAATACGATCGGTATGTTGGTAACCACCAGTAGTAACCCGTTTTTTGCGGAAGTAGTACGTCAC
GTCGAACGTTATTGTGAACGCCATAACTATCATTTAATTTTAGTGAATACTGACGGTAACAGTACCAATTTAGCACAACA
TTTAGCCCGCTTGTTACGCAAACAAGTGGACGGTTTATTATTAATGTGTTCCGAGCCACAAGATTTGGATGAAAGTGTGA
TGGCGAATATTCACTTGCCAATGGTGGTGATTGACTGGTGGCAACAGGCATTGAAAGCGGATAACGTACACGAAAATTCG
GAATTAGGTGGTTATCTTGCAACAAAAGCGTTAATTGATGCCGGTTATACCGAGATTGCGGTAATTACCGGTGAGCAATC
GAAATCGCATACATTAAACCGTTTACAAGGTTACAAGCGGGCGATTCTAGAGGCAAATTTGCCAATTCGTCCGGAATGGA
TTGTGGAAGGTCACTTCGATTATCAAGCCGGTTTGGAATATGCAAGCCGGTTATTGGCACTAAACTCTCGCCCGCAAGCG
ATTTTTGCGATGAGCGATAGCATTGCAATCGGTGTATATCAAGCCGCTTGGCAAGCCGGTTTACGTATTCCGCAAGATAT
TGCGGTGATCGGTTACGATAATATCGAATTGGCACAATATCTCTCTCCTCCGCTTTCTACGATTCATCAACCCAAAGCCC
GTTTGGCGAAGAATGCGGTGGAGCAGTTGATCGCCCGTATTCATCAGCCGGATAAAGCTTATCAAGAAATCGAACTTACT
CCCGAACTTGTCGTTCGCCGTTCTTTTTAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.061

100

0.362