Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   K3F53_RS14120 Genome accession   NZ_CP080764
Coordinates   2722425..2723378 (-) Length   317 a.a.
NCBI ID   WP_057900457.1    Uniprot ID   A0A1G7YFC1
Organism   Aneurinibacillus thermoaerophilus strain CCM 8960     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2688194..2731294 2722425..2723378 within 0


Gene organization within MGE regions


Location: 2688194..2731294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3F53_RS13945 (K3F53_13945) - 2688194..2689225 (-) 1032 WP_057898002.1 cytochrome d ubiquinol oxidase subunit II -
  K3F53_RS13950 (K3F53_13950) - 2689256..2690593 (-) 1338 WP_057898001.1 cytochrome ubiquinol oxidase subunit I -
  K3F53_RS13955 (K3F53_13955) - 2690745..2691458 (+) 714 WP_057898000.1 polysaccharide deacetylase family protein -
  K3F53_RS13960 (K3F53_13960) - 2691676..2692467 (+) 792 WP_057897999.1 LysM peptidoglycan-binding domain-containing protein -
  K3F53_RS13965 (K3F53_13965) - 2692527..2692820 (-) 294 Protein_2683 sigma-70 family RNA polymerase sigma factor -
  K3F53_RS19455 - 2693020..2693115 (+) 96 Protein_2684 DUF4351 domain-containing protein -
  K3F53_RS13970 (K3F53_13970) - 2693240..2693953 (-) 714 WP_091260898.1 AHH domain-containing protein -
  K3F53_RS13975 (K3F53_13975) - 2693991..2694407 (-) 417 Protein_2686 transposase -
  K3F53_RS13980 (K3F53_13980) - 2694378..2694589 (+) 212 Protein_2687 helix-turn-helix domain-containing protein -
  K3F53_RS13985 (K3F53_13985) - 2694909..2695235 (-) 327 WP_220559054.1 hypothetical protein -
  K3F53_RS19465 - 2695251..2696354 (-) 1104 WP_246615643.1 hypothetical protein -
  K3F53_RS13995 (K3F53_13995) - 2696910..2697476 (-) 567 WP_236782011.1 RNA-guided endonuclease TnpB family protein -
  K3F53_RS14000 (K3F53_14000) tnpA 2697689..2698057 (-) 369 Protein_2691 IS200/IS605 family transposase -
  K3F53_RS14005 (K3F53_14005) - 2698235..2698462 (-) 228 WP_057900486.1 alpha/beta-type small acid-soluble spore protein -
  K3F53_RS14010 (K3F53_14010) - 2698659..2699273 (-) 615 WP_057900476.1 hypothetical protein -
  K3F53_RS14015 (K3F53_14015) - 2699479..2700114 (-) 636 WP_057900475.1 pyridoxamine 5'-phosphate oxidase family protein -
  K3F53_RS14020 (K3F53_14020) - 2700332..2700652 (-) 321 WP_057900474.1 hypothetical protein -
  K3F53_RS14025 (K3F53_14025) - 2700883..2701038 (+) 156 WP_175493690.1 hypothetical protein -
  K3F53_RS14030 (K3F53_14030) tnpA 2701253..2701671 (+) 419 Protein_2697 IS200/IS605 family transposase -
  K3F53_RS14035 (K3F53_14035) - 2701671..2702765 (+) 1095 WP_057900473.1 RNA-guided endonuclease TnpB family protein -
  K3F53_RS14040 (K3F53_14040) - 2702967..2703128 (-) 162 WP_156423999.1 hypothetical protein -
  K3F53_RS14045 (K3F53_14045) - 2703308..2704846 (+) 1539 WP_057900472.1 recombinase family protein -
  K3F53_RS19470 - 2704894..2704987 (-) 94 Protein_2701 RNA polymerase subunit sigma-70 -
  K3F53_RS14050 (K3F53_14050) - 2705012..2706517 (-) 1506 WP_057900471.1 recombinase family protein -
  K3F53_RS14055 (K3F53_14055) - 2706813..2707271 (+) 459 WP_091260134.1 DUF2642 domain-containing protein -
  K3F53_RS14060 (K3F53_14060) - 2707343..2708038 (-) 696 WP_057900468.1 L,D-transpeptidase family protein -
  K3F53_RS14065 (K3F53_14065) gltS 2708825..2710030 (-) 1206 WP_220559055.1 sodium/glutamate symporter -
  K3F53_RS14070 (K3F53_14070) hutG 2710050..2711015 (-) 966 WP_246615644.1 formimidoylglutamase -
  K3F53_RS14075 (K3F53_14075) - 2711390..2712745 (-) 1356 WP_220561005.1 sigma-54 dependent transcriptional regulator -
  K3F53_RS14080 (K3F53_14080) - 2712720..2714735 (-) 2016 WP_246615645.1 transporter substrate-binding domain-containing protein -
  K3F53_RS14085 (K3F53_14085) - 2714977..2715435 (+) 459 WP_057900464.1 LysM domain-containing protein -
  K3F53_RS14090 (K3F53_14090) - 2715435..2716160 (+) 726 WP_220561013.1 RNA-guided endonuclease TnpB family protein -
  K3F53_RS14095 (K3F53_14095) - 2716502..2716828 (-) 327 WP_057900462.1 metalloregulator ArsR/SmtB family transcription factor -
  K3F53_RS14100 (K3F53_14100) - 2716937..2719054 (-) 2118 Protein_2712 heavy metal translocating P-type ATPase -
  K3F53_RS14105 (K3F53_14105) - 2719467..2720417 (-) 951 WP_057900460.1 siderophore ABC transporter substrate-binding protein -
  K3F53_RS14110 (K3F53_14110) - 2720733..2721491 (-) 759 WP_057900459.1 ABC transporter ATP-binding protein -
  K3F53_RS14115 (K3F53_14115) - 2721485..2722435 (-) 951 WP_057900458.1 iron chelate uptake ABC transporter family permease subunit -
  K3F53_RS14120 (K3F53_14120) ceuB 2722425..2723378 (-) 954 WP_057900457.1 ABC transporter permease Machinery gene
  K3F53_RS14125 (K3F53_14125) - 2723723..2723902 (-) 180 Protein_2717 sigma factor -
  K3F53_RS14130 (K3F53_14130) - 2723892..2725505 (-) 1614 WP_220559057.1 recombinase family protein -
  K3F53_RS14135 (K3F53_14135) - 2725861..2726001 (-) 141 WP_220559058.1 hypothetical protein -
  K3F53_RS19945 (K3F53_14140) - 2726428..2726913 (-) 486 WP_220559059.1 VanZ family protein -
  K3F53_RS14145 (K3F53_14145) - 2726997..2727275 (-) 279 WP_220559060.1 hypothetical protein -
  K3F53_RS14150 (K3F53_14150) - 2727401..2728579 (+) 1179 WP_220559061.1 RNA-guided endonuclease TnpB family protein -
  K3F53_RS14155 (K3F53_14155) - 2728734..2729057 (-) 324 WP_220559062.1 hypothetical protein -
  K3F53_RS19950 (K3F53_14160) - 2729267..2729569 (-) 303 Protein_2724 MFS transporter -
  K3F53_RS19790 - 2730264..2730467 (+) 204 WP_327875087.1 hypothetical protein -
  K3F53_RS19795 - 2730605..2730796 (+) 192 WP_327860210.1 hypothetical protein -
  K3F53_RS14170 (K3F53_14170) - 2731091..2731294 (-) 204 Protein_2727 RNA polymerase subunit sigma-70 -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35271.77 Da        Isoelectric Point: 10.1013

>NTDB_id=594813 K3F53_RS14120 WP_057900457.1 2722425..2723378(-) (ceuB) [Aneurinibacillus thermoaerophilus strain CCM 8960]
MKKRYLFITLIVLSFISIFIGVKDISPLDIFDLTDDKAQILLVSRLPRLISIIIAGVSMSICGLIMQQLSRNKFVSPTTA
GTMDSARLGILVSLMIFTTASPLQKMLVAFIFALLGTFLFMKILEKIKFKDTIFIPLVGLMFGNIISSISTFFAYKYDLI
QNMSSWLQGDFSMIMKGRYELLYISIPLLIIAYVFANKFTVAGMGEDFSKNLGLNYKQVVNIGLIIVALMTSSVVLTVGM
IPFLGLIIPNIVTIYRGDHLKKSLSHTALLGAVFVLFCDILGRIVIYPYEISISLTVGIIGSGIFVYLLMRRKAYGL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=594813 K3F53_RS14120 WP_057900457.1 2722425..2723378(-) (ceuB) [Aneurinibacillus thermoaerophilus strain CCM 8960]
ATGAAAAAAAGATATTTATTTATTACACTCATTGTTTTGTCATTCATTTCTATTTTTATTGGTGTAAAAGATATATCACC
TTTAGATATTTTTGATTTGACGGACGATAAAGCTCAAATTTTATTGGTAAGCAGGCTTCCTCGTCTTATTAGCATTATTA
TTGCCGGCGTAAGTATGAGTATATGCGGCTTAATTATGCAACAGCTAAGCAGGAATAAGTTCGTATCTCCGACTACGGCT
GGAACGATGGATTCCGCCAGATTAGGAATTTTGGTTTCCTTAATGATATTCACGACGGCGAGTCCTTTGCAAAAGATGCT
CGTTGCTTTTATCTTTGCGTTGCTTGGAACGTTTCTGTTTATGAAAATTTTAGAGAAGATAAAATTCAAAGATACTATTT
TCATACCGTTGGTAGGATTGATGTTTGGTAATATTATCAGCTCCATATCGACTTTTTTTGCTTACAAGTATGATTTAATT
CAGAATATGTCTTCATGGTTACAAGGTGATTTTTCAATGATTATGAAAGGCCGATATGAGCTTTTGTATATTAGTATTCC
TTTGCTCATCATCGCCTATGTTTTTGCCAATAAATTTACTGTAGCAGGAATGGGCGAGGATTTTTCAAAAAATTTGGGGC
TGAACTATAAGCAAGTGGTAAATATAGGATTGATTATTGTAGCCTTAATGACATCTTCAGTAGTACTGACAGTAGGGATG
ATTCCTTTTCTAGGCCTTATTATCCCGAACATTGTCACGATATACCGAGGCGATCATTTGAAAAAAAGTCTTTCTCATAC
AGCTTTATTAGGGGCGGTATTTGTCCTGTTCTGTGACATACTCGGTCGTATCGTTATCTATCCGTACGAGATTTCAATCA
GTCTTACAGTTGGAATCATAGGAAGTGGTATTTTTGTTTATCTACTGATGAGGAGAAAGGCATATGGGTTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G7YFC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.7

96.845

0.539