Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   K3F53_RS12430 Genome accession   NZ_CP080764
Coordinates   2388056..2389783 (-) Length   575 a.a.
NCBI ID   WP_057898262.1    Uniprot ID   A0A0X8D383
Organism   Aneurinibacillus thermoaerophilus strain CCM 8960     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2383056..2394783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3F53_RS12405 (K3F53_12405) - 2383305..2383751 (+) 447 WP_057898266.1 GNAT family N-acetyltransferase -
  K3F53_RS12410 (K3F53_12410) - 2383799..2384638 (-) 840 WP_057898265.1 PHP domain-containing protein -
  K3F53_RS19700 - 2384645..2384773 (-) 129 WP_257721586.1 hypothetical protein -
  K3F53_RS12415 (K3F53_12415) - 2384934..2385146 (+) 213 WP_057898264.1 aspartyl-phosphate phosphatase Spo0E family protein -
  K3F53_RS12420 (K3F53_12420) spo0A 2385610..2386389 (-) 780 WP_091259557.1 sporulation transcription factor Spo0A -
  K3F53_RS12425 (K3F53_12425) spoIVB 2386617..2387918 (-) 1302 WP_220560932.1 SpoIVB peptidase -
  K3F53_RS12430 (K3F53_12430) recN 2388056..2389783 (-) 1728 WP_057898262.1 DNA repair protein RecN Machinery gene
  K3F53_RS12435 (K3F53_12435) ahrC 2389806..2390255 (-) 450 WP_057900271.1 transcriptional regulator AhrC/ArgR -
  K3F53_RS12440 (K3F53_12440) - 2390287..2391144 (-) 858 WP_091259550.1 NAD(+)/NADH kinase -
  K3F53_RS12445 (K3F53_12445) - 2391273..2392085 (-) 813 WP_220559018.1 TlyA family RNA methyltransferase -
  K3F53_RS12450 (K3F53_12450) dxs 2392089..2393972 (-) 1884 WP_057898260.1 1-deoxy-D-xylulose-5-phosphate synthase -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 65377.54 Da        Isoelectric Point: 4.7247

>NTDB_id=594811 K3F53_RS12430 WP_057898262.1 2388056..2389783(-) (recN) [Aneurinibacillus thermoaerophilus strain CCM 8960]
MLLELNIRNFAVIKEVSISFGRGLTILTGETGAGKSILIDAISMLLGGRGSSEYVRYGCKKAEIEGLFEFEADAPVLGML
KEMGIDVEDNTLIIRRELASTGKTVCRVNGRLVTLSMLREVAPWLINIHGQHEHQSLMQGERHIDWLDAFGDERIVPAFR
EFSKLYAQYQQLRSELDYISTNEREMVQRMDMLRFQLQEIVSANLKPGEDEELMKEKKKLSGGEKLVYSLEDAYRSLIGE
QRGIDWVGNAVSHLETILEYDEELRETHQMLESAFYQIEEAARLIRAYRDTIEFDPERLTQIESRLDEINRLKRKYGLSV
DEILEYGASIEDELDSMENRETRIEELQKKLKEVALDLAVEAQELSQIRKQIAEKLAVAIEQELKDLHMSRAQFKIAVRQ
QEDERGLDVNGNRFRVTSKGIDTVEFLIAPNPGEPLRPVSKIASGGELSRIMLAMKTILADAESTDTMIFDEVDTGVSGR
AAQAIAEKLMRVSRKRQVLSITHLPQVASMADTHLRIEKHMNEKETETKVNPLSYEERVVELARMLGGAQVTETTKDNAR
EMLAQAEEVKQELEG

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=594811 K3F53_RS12430 WP_057898262.1 2388056..2389783(-) (recN) [Aneurinibacillus thermoaerophilus strain CCM 8960]
ATGCTTCTGGAATTAAACATTCGCAACTTTGCCGTAATTAAAGAGGTCTCCATTTCGTTTGGACGAGGCCTTACGATTTT
AACCGGAGAAACGGGAGCAGGGAAATCGATTTTGATTGACGCCATCAGCATGCTTCTTGGTGGACGCGGCTCTTCTGAAT
ATGTTCGCTACGGATGCAAAAAAGCGGAAATTGAAGGACTGTTCGAATTCGAAGCAGATGCCCCGGTGCTTGGCATGCTC
AAGGAGATGGGGATTGATGTGGAAGACAATACGCTGATTATTCGCCGTGAATTGGCGAGTACGGGCAAGACGGTATGTCG
GGTGAACGGTCGGCTTGTAACTCTATCCATGCTTAGAGAAGTGGCTCCGTGGCTGATCAATATTCATGGCCAGCACGAAC
ATCAATCGCTTATGCAGGGTGAGCGGCATATTGACTGGCTGGATGCATTTGGTGACGAGAGAATCGTTCCCGCCTTTCGT
GAATTTTCTAAGCTGTACGCGCAGTATCAGCAACTCCGTTCCGAATTGGATTATATATCCACTAATGAACGGGAAATGGT
ACAGCGAATGGACATGCTTCGGTTTCAATTACAGGAGATTGTATCCGCTAACTTGAAGCCAGGTGAAGACGAAGAGCTTA
TGAAGGAGAAGAAAAAGCTTTCGGGTGGCGAAAAGCTTGTGTATAGTCTCGAAGACGCGTATCGTTCCCTTATTGGAGAA
CAGCGTGGCATTGACTGGGTGGGGAATGCGGTTAGCCATCTAGAAACCATTCTTGAATACGATGAAGAACTAAGGGAAAC
ACATCAAATGTTAGAAAGCGCATTTTACCAGATTGAAGAGGCAGCACGACTCATACGCGCGTACCGCGATACTATTGAAT
TCGACCCGGAGCGCCTCACACAGATTGAGAGCAGGCTGGATGAAATCAATCGTTTGAAGCGGAAATACGGCCTTTCGGTG
GATGAAATTTTGGAATACGGTGCTTCCATTGAAGATGAACTCGACAGCATGGAAAATCGGGAGACGCGCATTGAGGAACT
GCAAAAGAAGCTAAAGGAAGTCGCTCTTGATTTAGCGGTTGAGGCCCAAGAACTTTCGCAAATTCGCAAGCAAATCGCAG
AAAAACTTGCCGTGGCGATTGAGCAGGAACTGAAAGACCTGCACATGAGCCGTGCCCAGTTTAAAATCGCCGTTCGGCAG
CAGGAAGATGAGCGTGGACTTGATGTGAACGGTAACCGTTTTCGTGTGACGAGCAAGGGGATCGACACCGTCGAGTTTCT
GATTGCGCCGAATCCGGGCGAACCGCTCCGACCGGTCAGCAAAATTGCCTCCGGCGGCGAATTGTCCCGTATTATGCTGG
CGATGAAAACGATTCTTGCCGATGCGGAGAGCACGGATACGATGATTTTTGACGAGGTAGATACAGGAGTAAGCGGGCGG
GCCGCACAGGCGATTGCGGAAAAATTGATGCGGGTTTCCCGCAAACGTCAGGTATTGTCGATTACACATCTGCCACAGGT
GGCAAGCATGGCTGATACGCATCTGCGCATCGAGAAACATATGAATGAGAAAGAAACGGAGACGAAAGTCAATCCGCTGT
CGTACGAGGAGCGGGTGGTAGAACTTGCTCGCATGCTCGGCGGCGCTCAGGTAACTGAGACAACGAAAGACAATGCCCGT
GAAATGCTGGCGCAGGCTGAGGAAGTCAAGCAGGAGCTGGAAGGGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X8D383

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.394

99.826

0.513