Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   M6G44_RS03385 Genome accession   NZ_CP097377
Coordinates   730386..731930 (-) Length   514 a.a.
NCBI ID   WP_249849397.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain GD2107     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 725386..736930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M6G44_RS03360 (M6G44_03360) efeO 726270..727082 (+) 813 WP_005604121.1 iron uptake system protein EfeO -
  M6G44_RS03365 (M6G44_03365) efeB 727094..728287 (+) 1194 WP_237601177.1 iron uptake transporter deferrochelatase/peroxidase subunit -
  M6G44_RS03370 (M6G44_03370) - 728298..728918 (+) 621 WP_005596976.1 hypothetical protein -
  M6G44_RS03375 (M6G44_03375) - 728957..729775 (-) 819 WP_005604126.1 PHP domain-containing protein -
  M6G44_RS03380 (M6G44_03380) - 729779..730369 (-) 591 WP_005596980.1 hypothetical protein -
  M6G44_RS03385 (M6G44_03385) sbcB 730386..731930 (-) 1545 WP_249849397.1 exodeoxyribonuclease I Machinery gene
  M6G44_RS03390 (M6G44_03390) - 732172..733578 (-) 1407 WP_005614935.1 chloride channel protein -
  M6G44_RS03395 (M6G44_03395) asnS 733786..735189 (+) 1404 WP_237601178.1 asparagine--tRNA ligase -
  M6G44_RS03400 (M6G44_03400) epmB 735293..736294 (-) 1002 WP_005600857.1 EF-P beta-lysylation protein EpmB -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 58520.66 Da        Isoelectric Point: 5.9086

>NTDB_id=594783 M6G44_RS03385 WP_249849397.1 730386..731930(-) (sbcB) [Actinobacillus pleuropneumoniae strain GD2107]
MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGITPQQCNAEGVPEPEF
AARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNF
KLENLTKANGIAHENAHDAMADVYATIAMVKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA
WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHINRCPIIAPAKVLLPENAARL
GIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSANVETTLYDGFFSPADKNNMSILRTLPPQELAHHGLQFADER
VEALLFHYRARHYPETLSRAEQIKWQKYCHQQIDAKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIAEFQVVKHT
ANAQSEQLVSALNQVAEQKVNKAAKLEMLKTLIK

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=594783 M6G44_RS03385 WP_249849397.1 730386..731930(-) (sbcB) [Actinobacillus pleuropneumoniae strain GD2107]
ATGAATAAAAATCTTACTTTTTTCTTTTATGATTACGAAAGTTTCGGTGTGAGTCCGGCGTTAGATCGTCCGGCACAGTT
TGCCGGTATTCGTACCGATAGTGATTTTAATATCATCGGTGAGCCGGTGATGTTTTATTGTAAGCAAACACCGGATTATT
TACCTTCGCCTGAAGCGGTGATGGTGACGGGTATTACTCCGCAACAGTGTAACGCTGAAGGCGTGCCGGAACCGGAATTT
GCTGCACGAATCCACGCTGAATTCAGCCAGCCGAACACTTGCATTTTAGGCTATAACAATATTCGTTATGACGATGAAAT
GACCCGTTATACCTTTTTCCGCAATTTCTTTGACCCGTATGAATATAGCTGGAAAAATGGTAATTCTCGTTGGGATCTGT
TAGATCTTGTTCGAGCTTGTTATGCACTGCGTCCGGACGGCATTGAATGGGTAATAGATGAAAACGGTGTGCCGAATTTC
AAATTAGAGAATCTCACTAAAGCGAACGGCATTGCTCATGAAAATGCGCACGATGCAATGGCGGACGTTTACGCCACGAT
TGCGATGGTGAAATTGATTAAGCAAAAACAGCCGAAACTTTTCCAATTTTTCTTTGAGAATCGTGGTAAGAAGGAAATTG
AGAAAATGATTGATACCGGTGAAATGACCCCGTTGGTACACGTTTCCGGTATGTTCGGTAATGCGCGTGCTAATACCGCT
TGGATTGCACCGATTGCGTGGCACCCAACTAATCAAAATCAAGTGTTATGTTGCGATCTATCCGGCGATGTTAGTGCCTT
ATTAACGGATTCAGCGGAAGAATTACGTACTCGTCTATACACTAAAAAAGAAGAGCTGGCTGAAGGTGTTGCACCCGTTC
CATTAAAAGGGGTACATATTAATCGTTGTCCGATTATTGCCCCGGCAAAAGTGTTGTTGCCTGAAAATGCGGCTCGCTTA
GGCATTGATCGTGAGCGTTGTTTGGAAAATCTCAAATTACTGAAGGCGAATAAAAGTTTAGTGCGTGAGAAAGTGACCGA
AATTTTTATGGAAGAACGGAGCTTTGAACCTTCTGCGAATGTGGAAACGACTCTGTATGACGGCTTTTTCTCACCGGCAG
ATAAAAATAATATGTCGATTTTGCGTACGTTACCGCCGCAAGAATTGGCGCATCACGGCTTACAATTCGCCGATGAACGA
GTAGAAGCTTTGTTATTTCATTATCGAGCCAGACATTATCCCGAAACATTGAGCCGAGCGGAACAGATTAAATGGCAGAA
ATATTGTCATCAGCAGATAGATGCCAAATCGGCACAATTTGCCGAAGCGATTGATAGCTTATTCCAAATTCATCACGATA
ATCCGGAAAAGGTAAAATTATTGGAAAATTTGACCGCTTACGCTGCACAAATTGCGGAATTTCAGGTAGTTAAACACACC
GCTAATGCGCAAAGCGAGCAGCTAGTTTCAGCCTTAAACCAAGTAGCGGAACAGAAGGTGAATAAAGCGGCGAAGTTGGA
AATGCTAAAGACATTAATTAAATAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(208-469)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

53.961

90.856

0.49