Detailed information NTG0594776

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: M6G44_RS01595
• Genome accession: NZ_CP097377
• Coordinates: 323809..324813 (+)
• Length: 334 a.a.
• NCBI ID: WP_005607006.1
• Uniprot ID: -
• Organism: Actinobacillus pleuropneumoniae strain GD2107
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 318809..329813

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M6G44_RS01570 (M6G44_01570)	potA	319779..320894 (+)	1116	WP_005606999.1	spermidine/putrescine ABC transporter ATP-binding protein PotA	-
M6G44_RS01575 (M6G44_01575)	potB	320881..321747 (+)	867	WP_005603539.1	spermidine/putrescine ABC transporter permease PotB	-
M6G44_RS01580 (M6G44_01580)	potC	321747..322514 (+)	768	WP_012478315.1	spermidine/putrescine ABC transporter permease PotC	-
M6G44_RS01585 (M6G44_01585)	-	322660..323184 (+)	525	WP_005619921.1	YniB family protein	-
M6G44_RS01590 (M6G44_01590)	ruvA	323185..323790 (+)	606	WP_005607004.1	Holliday junction branch migration protein RuvA	Machinery gene
M6G44_RS01595 (M6G44_01595)	ruvB	323809..324813 (+)	1005	WP_005607006.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
M6G44_RS01600 (M6G44_01600)	ubiG	324870..325574 (-)	705	WP_005616730.1	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	-
M6G44_RS01605 (M6G44_01605)	gyrA	325754..328444 (+)	2691	WP_249849376.1	DNA topoisomerase (ATP-hydrolyzing) subunit A	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36943.36 Da
• Isoelectric Point: 4.7294

>NTDB_id=594776 M6G44_RS01595 WP_005607006.1 323809..324813(+) (ruvB) [Actinobacillus pleuropneumoniae strain GD2107]
MIEADRIISASPKREEEIIDRAIRPKLLADYVGQPSVREQMEIFIKAAKLRDEALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVDDLTSIVKRSADCLNLNLSPDGAYEVARRSRGTPRIANRLLRRVRDYADVRNNG
VITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSRTYAHLGIAKLD

Nucleotide

• Length: 1005 bp

>NTDB_id=594776 M6G44_RS01595 WP_005607006.1 323809..324813(+) (ruvB) [Actinobacillus pleuropneumoniae strain GD2107]
ATGATTGAAGCAGATAGAATAATTAGTGCCTCGCCGAAGCGTGAGGAAGAAATCATCGATCGTGCGATTCGTCCTAAATT
ATTAGCGGATTATGTCGGTCAGCCGTCTGTACGAGAGCAGATGGAGATCTTTATTAAAGCGGCAAAATTGCGTGATGAGG
CGCTAGATCACTTATTAATTTTTGGTCCGCCGGGATTGGGTAAAACCACCCTAGCTAATATTGTTGCCAACGAAATGGGC
GTGAATATTCGCACAACTTCCGGACCTGTGTTAGAGAAAGCGGGCGATCTAGCGGCAATGCTGACTAATTTAGAGCCTTA
TGATGTGTTATTTATTGATGAGATCCACCGCTTATCACCGGCAATTGAAGAAGTGCTTTATCCGGCGATGGAAGATTATC
AGTTGGATATTATGATTGGCGAAGGGCCGGCGGCACGTTCAATTAAACTAGATTTACCGCCGTTTACCTTAGTGGGAGCA
ACCACCCGTGCCGGTTCACTGACTTCTCCGTTACGCGACCGTTTTGGAATTGTACAGCGTTTAGAGTTTTACTCGGTAGA
TGATTTAACCTCGATCGTAAAACGTAGTGCCGATTGCTTAAACTTAAATTTATCGCCGGACGGTGCTTATGAAGTGGCTC
GCCGTTCACGTGGCACCCCTCGAATTGCTAACCGTTTATTACGCCGTGTGCGAGATTATGCCGATGTGCGTAATAACGGC
GTGATTACCTCTGATATTGCTAAACAAGCGTTGGCGATGCTTGATGTAGATTCCGAAGGCTTTGACTTTATGGACATCAA
ATTATTGCAAGCGATTGTAGAACGCTTTGACGGAGGCCCGGTCGGCTTAGATAATTTAGCTGCAGCGATAGGTGAAGAGC
GAGATACGATTGAAGACGTACTTGAACCTTATTTGATTCAGCAGGGTTTTTTACAGCGAACGCCACGAGGGCGTATTGCT
ACTAGCCGAACTTATGCGCATTTAGGCATTGCGAAGTTAGATTAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

• RuvB AAA lid domain (AAA_lid_4) (184-257)

• RuvB C-terminal winged helix domain (WHD_RuvB) (259-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	62.037	97.006	0.602
ruvB	Streptococcus pneumoniae TIGR4	59.259	97.006	0.575
ruvB	Streptococcus pneumoniae R6	59.259	97.006	0.575
ruvB	Streptococcus pneumoniae D39	59.259	97.006	0.575
ruvB	Synechocystis sp. PCC 6803	54.969	96.407	0.53
ruvB	Helicobacter pylori 26695	54.952	93.713	0.515