Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K2L43_RS01115 Genome accession   NZ_CP080761
Coordinates   247477..248859 (+) Length   460 a.a.
NCBI ID   WP_011803649.1    Uniprot ID   A0AAX1WWC5
Organism   Diaphorobacter sp. MNS-0     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 242477..253859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K2L43_RS01085 (K2L43_01085) alr 243110..244207 (+) 1098 WP_220638331.1 alanine racemase -
  K2L43_RS01090 (K2L43_01090) - 244216..245049 (+) 834 WP_220638332.1 hypothetical protein -
  K2L43_RS01095 (K2L43_01095) - 245046..245186 (+) 141 WP_220638333.1 hypothetical protein -
  K2L43_RS01100 (K2L43_01100) - 245285..246304 (+) 1020 WP_304515501.1 cytochrome-c peroxidase -
  K2L43_RS01105 (K2L43_01105) - 246398..247012 (-) 615 WP_103736849.1 glutathione S-transferase family protein -
  K2L43_RS01110 (K2L43_01110) - 247160..247366 (-) 207 WP_220638334.1 hypothetical protein -
  K2L43_RS01115 (K2L43_01115) radA 247477..248859 (+) 1383 WP_011803649.1 DNA repair protein RadA Machinery gene
  K2L43_RS01120 (K2L43_01120) - 248929..249369 (+) 441 WP_088887885.1 glycerate kinase -
  K2L43_RS01125 (K2L43_01125) - 249416..250354 (+) 939 WP_047350207.1 branched-chain amino acid transaminase -
  K2L43_RS01130 (K2L43_01130) - 250359..250565 (+) 207 WP_088887884.1 zinc-finger domain-containing protein -
  K2L43_RS01135 (K2L43_01135) - 250668..251975 (+) 1308 WP_220638335.1 O-antigen ligase -
  K2L43_RS01140 (K2L43_01140) - 251985..253142 (+) 1158 WP_220638336.1 glycosyltransferase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 47828.30 Da        Isoelectric Point: 6.8876

>NTDB_id=594776 K2L43_RS01115 WP_011803649.1 247477..248859(+) (radA) [Diaphorobacter sp. MNS-0]
MAKEKTIFSCTECGGTSPRWLGKCPSCGAWNTLIESVPDAGPGKNRLSGAGQYAGLAQAQAVMPLAAIEATEVARTASGI
EELDRVLGGGVVEGGVVLIGGDPGIGKSTLLLQAMDALQRAGLPTLYVTGEESGAQVALRSRRLGLDASQVNVLAEIQLE
KILATVEATQPAVCVIDSIQTVYSDQLTSAPGSVAQVRECAAHLTRMAKATGIAVILVGHVTKEGALAGPRVLEHMVDTV
LYFEGDTHSSFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVANPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVDG
GGPSPRRLSVGLERDRLAMLLAVLHRHAGVACADQDVFVNAVGGVRISEPAADLAVMLAITSSLRGKALPKGFIAFGEVG
LAGEVRPAPRGQERLKEAAKLGFTVAVVPKANAPKKPIAGLEIHAVERVDEAMTAVRGLD

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=594776 K2L43_RS01115 WP_011803649.1 247477..248859(+) (radA) [Diaphorobacter sp. MNS-0]
ATGGCCAAAGAAAAAACCATCTTCTCCTGCACCGAATGCGGTGGCACCAGTCCGCGCTGGCTGGGCAAATGCCCCTCCTG
CGGTGCGTGGAACACCCTGATCGAATCCGTGCCCGACGCTGGACCGGGCAAGAACCGCCTGAGCGGGGCCGGCCAGTACG
CGGGCCTGGCCCAGGCGCAGGCGGTGATGCCGCTGGCCGCCATCGAGGCGACCGAGGTGGCGCGCACGGCGAGTGGCATC
GAGGAACTGGACCGCGTGCTGGGCGGTGGCGTGGTCGAGGGCGGGGTGGTGCTCATCGGCGGCGACCCGGGCATCGGCAA
GTCCACGCTGCTCTTGCAGGCGATGGACGCGCTGCAGCGCGCGGGCCTGCCCACGCTGTACGTGACGGGCGAGGAGAGCG
GCGCCCAGGTGGCGTTGCGTTCGCGCCGGCTGGGGCTGGATGCGAGCCAGGTGAACGTGTTGGCCGAGATCCAACTCGAA
AAAATCCTCGCCACCGTGGAGGCCACGCAGCCCGCGGTGTGCGTGATCGACTCCATCCAGACCGTCTATTCCGACCAGCT
CACCAGCGCCCCGGGCTCGGTGGCCCAGGTGCGCGAGTGCGCGGCCCACCTCACGCGCATGGCCAAGGCCACAGGCATCG
CCGTCATCCTGGTGGGCCACGTGACCAAGGAAGGCGCGCTGGCCGGCCCGCGCGTGCTGGAGCACATGGTGGACACGGTG
CTGTACTTCGAGGGCGACACGCACAGCAGCTTCCGTCTGGTGCGCGCCATCAAGAACCGCTTTGGCGCCGTGAACGAGAT
CGGCGTGTTCGCCATGACCGAGAAGGGCCTCAAAGGTGTGGCGAACCCCAGTGCCATTTTCTTGAGCCAGCACAGCGAGC
CGGTGCCCGGCAGCTGCGTGCTGGTCACGCTGGAGGGCACGCGGCCGATGCTGGTGGAGATCCAGGCGCTGGTGGACGGC
GGGGGGCCCAGCCCGCGGCGCCTGTCGGTGGGGCTGGAGCGCGACCGCCTGGCCATGCTGCTGGCCGTGCTGCACCGCCA
CGCGGGCGTGGCCTGCGCCGACCAGGACGTATTCGTCAATGCCGTTGGGGGCGTGCGCATCAGCGAACCCGCGGCCGACC
TGGCCGTGATGCTGGCCATCACCAGCAGCCTGCGCGGCAAGGCGTTGCCCAAGGGCTTCATCGCGTTTGGCGAGGTGGGC
CTGGCTGGCGAGGTGCGCCCCGCGCCGCGTGGCCAGGAGCGCCTGAAGGAAGCCGCCAAACTGGGCTTCACGGTGGCCGT
GGTGCCCAAAGCCAATGCGCCCAAGAAGCCGATCGCCGGGCTGGAGATCCACGCAGTGGAGCGCGTGGACGAGGCCATGA
CTGCCGTGCGCGGGCTGGACTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-225)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(363-454)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

99.13

0.485
  radA Streptococcus mitis NCTC 12261

47.046

99.348

0.467
  radA Streptococcus pneumoniae D39

48.848

94.348

0.461
  radA Streptococcus pneumoniae TIGR4

48.848

94.348

0.461
  radA Streptococcus mitis SK321

48.848

94.348

0.461
  radA Streptococcus pneumoniae R6

48.848

94.348

0.461
  radA Streptococcus pneumoniae Rx1

48.848

94.348

0.461