Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   M6G44_RS00490 Genome accession   NZ_CP097377
Coordinates   85779..86384 (-) Length   201 a.a.
NCBI ID   WP_005618700.1    Uniprot ID   A0ABM6X5M1
Organism   Actinobacillus pleuropneumoniae strain GD2107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 80779..91384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M6G44_RS00460 (M6G44_00460) - 81528..82517 (+) 990 WP_005606760.1 peptide ABC transporter ATP-binding protein -
  M6G44_RS00465 (M6G44_00465) psiE 82590..83000 (-) 411 WP_005595704.1 phosphate-starvation-inducible protein PsiE -
  M6G44_RS00470 (M6G44_00470) - 83078..83710 (-) 633 WP_005595707.1 hydrolase -
  M6G44_RS00475 (M6G44_00475) - 83765..84109 (-) 345 WP_005600044.1 RidA family protein -
  M6G44_RS00480 (M6G44_00480) - 84196..85233 (-) 1038 WP_005595712.1 branched-chain amino acid aminotransferase -
  M6G44_RS00485 (M6G44_00485) grxD 85375..85707 (-) 333 WP_005600046.1 Grx4 family monothiol glutaredoxin -
  M6G44_RS00490 (M6G44_00490) recR 85779..86384 (-) 606 WP_005618700.1 recombination mediator RecR Machinery gene
  M6G44_RS00495 (M6G44_00495) - 86455..86784 (-) 330 WP_005600053.1 YbaB/EbfC family nucleoid-associated protein -
  M6G44_RS00500 (M6G44_00500) - 86953..87810 (-) 858 WP_005595716.1 energy transducer TonB -
  M6G44_RS00505 (M6G44_00505) exbD 87820..88209 (-) 390 WP_005595717.1 TonB system transport protein ExbD -
  M6G44_RS00510 (M6G44_00510) exbB 88254..88706 (-) 453 WP_005595719.1 TonB-system energizer ExbB -
  M6G44_RS00515 (M6G44_00515) glpE 88894..89220 (+) 327 WP_005606763.1 thiosulfate sulfurtransferase GlpE -
  M6G44_RS00520 (M6G44_00520) - 89264..90109 (+) 846 WP_005603255.1 co-chaperone YbbN -
  M6G44_RS00525 (M6G44_00525) dhaM 90183..90590 (-) 408 WP_005595723.1 dihydroxyacetone kinase phosphoryl donor subunit DhaM -
  M6G44_RS00530 (M6G44_00530) dhaL 90599..91225 (-) 627 WP_005595724.1 dihydroxyacetone kinase subunit DhaL -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22182.40 Da        Isoelectric Point: 6.4865

>NTDB_id=594769 M6G44_RS00490 WP_005618700.1 85779..86384(-) (recR) [Actinobacillus pleuropneumoniae strain GD2107]
MQISPLLENLMEALRALPGVGPKSAQRMAYHLLQRNRSGGINLSKALNEAMTHIGHCRSCRTFTEEDECNICKNPRRQMS
GQLCVVEMPEDIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQSRLENESFHEVILATNPTIEGDATANYIAEM
CRIHNVKVTRIAHGIPVGGSLEMVDGTTLSHSFAGRRDISL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=594769 M6G44_RS00490 WP_005618700.1 85779..86384(-) (recR) [Actinobacillus pleuropneumoniae strain GD2107]
ATGCAAATTAGCCCTTTACTCGAAAATCTGATGGAAGCCCTACGTGCATTACCCGGTGTCGGCCCGAAATCCGCGCAGCG
TATGGCATACCATTTATTGCAACGCAATCGTTCCGGCGGTATCAATTTATCCAAAGCCTTAAATGAAGCGATGACGCATA
TCGGTCATTGCCGTTCTTGCCGTACTTTTACCGAAGAAGACGAATGCAATATTTGTAAAAATCCTCGTCGCCAAATGAGC
GGTCAGCTTTGCGTAGTAGAAATGCCGGAAGATATTCAAGCGATTGAACAAACCGGACAGTTTTCGGGACGTTATTTCGT
ATTAATGGGACATCTTTCACCGCTAGACGGTATCGGACCGAGAGAAATCGGCTTGGATTTGTTACAAAGCCGTTTAGAAA
ACGAATCTTTTCACGAAGTTATTCTAGCTACCAATCCGACCATTGAAGGTGATGCCACCGCCAACTATATTGCGGAAATG
TGCCGCATTCACAACGTGAAAGTAACTCGAATTGCGCATGGGATTCCGGTCGGCGGTTCATTAGAAATGGTAGACGGTAC
GACCCTTTCCCACTCTTTTGCCGGCAGACGAGATATTTCGTTATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(82-172)

RecR protein (RecR_ZnF)

(42-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

42.714

99.005

0.423
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42

99.502

0.418