Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ABEKA_RS07745 Genome accession   NZ_CP080636
Coordinates   1312019..1312876 (+) Length   285 a.a.
NCBI ID   WP_017397977.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain EK30A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1307019..1317876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEKA_RS07720 (ABEKA_1306) - 1307253..1308458 (+) 1206 WP_121980168.1 CsgG/HfaB family protein -
  ABEKA_RS07725 (ABEKA_1307) - 1308543..1309217 (+) 675 WP_004732224.1 hypothetical protein -
  ABEKA_RS07730 (ABEKA_1308) - 1309533..1310108 (-) 576 WP_004732222.1 xanthine phosphoribosyltransferase -
  ABEKA_RS07735 (ABEKA_1309) - 1310197..1310910 (-) 714 WP_004732221.1 DUF3108 domain-containing protein -
  ABEKA_RS07740 (ABEKA_1310) - 1311070..1311756 (-) 687 WP_004732218.1 hypothetical protein -
  ABEKA_RS07745 (ABEKA_1311) tonB2 1312019..1312876 (+) 858 WP_017397977.1 TonB family protein Machinery gene
  ABEKA_RS07750 (ABEKA_1312) ybeY 1313060..1313542 (-) 483 WP_005265590.1 rRNA maturation RNase YbeY -
  ABEKA_RS07755 (ABEKA_1313) - 1313565..1314641 (-) 1077 WP_004732214.1 PhoH family protein -
  ABEKA_RS07760 (ABEKA_1314) miaB 1314679..1316136 (-) 1458 WP_005265592.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32677.02 Da        Isoelectric Point: 5.7562

>NTDB_id=594624 ABEKA_RS07745 WP_017397977.1 1312019..1312876(+) (tonB2) [Acinetobacter lwoffii strain EK30A]
MPLVRTWWKDPVFSSAVLAAGILHLIVLTLEFGMPQDRDTSTKEIAVSLRQTDEKIEHADFLAQTDQQGSGQFREAHRMS
SDMPSPLMEQHAGEELQESLDMLQQQQELSFEEKVLMTTLSWQKQAEENQRKKMQEQLQSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQSKQDVSAAYLEKFREKVEFYGNRYYPEAAKQQNLAGEVRLMVILNQNGGIRAIRLIDSSGHAML
DEAAKSSVRKAAPFGAFDSKMKEISELRVIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=594624 ABEKA_RS07745 WP_017397977.1 1312019..1312876(+) (tonB2) [Acinetobacter lwoffii strain EK30A]
ATGCCTCTGGTCAGAACTTGGTGGAAAGATCCAGTGTTTAGCAGTGCGGTGCTTGCCGCAGGCATTCTGCATTTGATCGT
GCTAACTCTGGAATTTGGTATGCCGCAAGATCGGGATACCAGTACCAAAGAAATCGCAGTCAGTTTGCGACAGACTGATG
AAAAAATTGAGCATGCCGATTTTTTGGCTCAAACGGACCAGCAGGGTTCCGGCCAGTTTAGAGAGGCGCATCGCATGTCG
AGTGATATGCCATCGCCGTTAATGGAGCAACATGCAGGCGAAGAACTGCAAGAAAGTCTGGATATGCTGCAACAGCAACA
GGAACTCAGTTTTGAAGAAAAAGTCCTGATGACCACCTTGAGCTGGCAAAAGCAGGCGGAAGAAAATCAGCGTAAAAAAA
TGCAGGAGCAATTACAGAGCCAGTTTCAGGCCAAAGCGGCCATGGTCGCCAGTCTGGAAGCGCAATATTTACAGCGTCAG
CAAAATTTCAGTCGTCAGCAAAAAATTAAGACTGTGGATGGTATTCAGTCCAAGCAGGATGTTTCGGCCGCATATCTGGA
AAAGTTCCGTGAAAAAGTGGAATTTTATGGGAACCGCTACTATCCGGAAGCAGCTAAGCAGCAGAATCTGGCAGGGGAAG
TACGGCTGATGGTGATCCTGAACCAGAATGGCGGAATTCGTGCCATTCGGCTGATTGACAGTTCAGGACATGCCATGCTG
GACGAAGCAGCCAAATCTTCCGTGCGTAAGGCAGCACCATTTGGTGCTTTCGACAGTAAAATGAAAGAAATTTCCGAGCT
GCGGGTGATTCGTACCTGGCGATTTGATCCGGCTGAAGCAGAGTTTGAAGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.118

97.895

0.716