Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ABEKA_RS06960 Genome accession   NZ_CP080636
Coordinates   1170497..1172674 (+) Length   725 a.a.
NCBI ID   WP_138743431.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain EK30A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1165497..1177674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEKA_RS06940 (ABEKA_1141) pilM 1167535..1168593 (+) 1059 WP_005265529.1 pilus assembly protein PilM Machinery gene
  ABEKA_RS06945 (ABEKA_1142) - 1168593..1169232 (+) 640 Protein_1054 PilN domain-containing protein -
  ABEKA_RS06950 (ABEKA_1144) - 1169229..1169951 (+) 723 Protein_1055 type 4a pilus biogenesis protein PilO -
  ABEKA_RS06955 (ABEKA_1146) - 1169951..1170479 (+) 529 Protein_1056 pilus assembly protein PilP -
  ABEKA_RS06960 (ABEKA_1148) pilQ 1170497..1172674 (+) 2178 WP_138743431.1 type IV pilus secretin PilQ family protein Machinery gene
  ABEKA_RS06965 (ABEKA_1149) aroK 1172711..1173247 (+) 537 WP_005265535.1 shikimate kinase AroK -
  ABEKA_RS06970 (ABEKA_1150) aroB 1173276..1174355 (+) 1080 WP_005265536.1 3-dehydroquinate synthase -
  ABEKA_RS06975 (ABEKA_1151) - 1174422..1175354 (-) 933 WP_082191737.1 IS5-like element IS17 family transposase -
  ABEKA_RS06980 (ABEKA_1152) - 1175926..1177560 (+) 1635 WP_005265546.1 O-antigen ligase family protein -

Sequence

Protein


Download         Length: 725 a.a.        Molecular weight: 79166.71 Da        Isoelectric Point: 4.9768

>NTDB_id=594622 ABEKA_RS06960 WP_138743431.1 1170497..1172674(+) (pilQ) [Acinetobacter lwoffii strain EK30A]
MNKSIKEFIFGDVNTMNRVFRQFSMGAVAIAVMQAASAQVSMTNVVPMQLPGQGTEIRVMFNGLPPQPQAYQLESPSRLI
LDFDKAQQNLKQSSIPVATREASSVDVTSDAQRARLTVNLTEAGAFTTRVEGNTFILKINSATPVAIAQPVQQQSAQGIS
NIGFQRGAQGEGQVVIDLLGNNTPVDVQQQGTKVIVRTLGSKIPAHLTRRLNVNDFATPVSSVDAVNQNGSGVIKIQSAE
SYEYMAYQTDNKLTISLKRPEAKSPLRPKTVAYSGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEVP
WDQALDIVLKTKNLDKRRNGNVIWIAPVAELIKAEEEEAKAIKQSVALAPIQTEYMQLSYAKAADIEKLITQNKSAQNSS
NSSNSSSNTTNNDDKESLLSSRGSVSIDARTNTLIVNDTQPFIDKIRNMVDLLDVQVKQVMVEARVVRASTEFAKEMGVK
WGILSQGITNNDHLLVGGSDTTLWDLRTPEIDSTTGIPEYEIQRPDNLNVDLGVENAAGRIAFGLISLSDFMLDLELSAL
QADGYGEVISTPKVLTADKQKATVESGLEVPYQSTEGSGASATATTEFKDVVLKLDVTPSITPDGKVQMALDISSDSIAG
VTPMGEYYLNKNRLNTNVLVENGETVVLGGIFEQETLNNQTKVPFLGDIPYLGRLFRKDVKTDNKRELLIFVTPRIVNDS
VSRNH

Nucleotide


Download         Length: 2178 bp        

>NTDB_id=594622 ABEKA_RS06960 WP_138743431.1 1170497..1172674(+) (pilQ) [Acinetobacter lwoffii strain EK30A]
ATGAATAAGAGTATTAAAGAATTTATTTTTGGGGATGTTAATACAATGAATCGTGTGTTTCGTCAGTTTTCCATGGGTGC
TGTTGCGATTGCGGTGATGCAAGCGGCTAGTGCACAGGTTTCAATGACCAATGTAGTACCCATGCAGCTTCCTGGACAAG
GAACTGAGATTCGGGTGATGTTCAATGGTTTGCCACCACAACCACAGGCCTATCAATTAGAATCACCGTCACGTTTGATT
CTGGACTTTGACAAGGCACAACAGAATTTAAAACAAAGCAGTATTCCGGTGGCAACACGTGAAGCCAGTTCAGTGGATGT
CACTTCGGATGCTCAGCGGGCACGTCTGACGGTAAACTTGACCGAGGCAGGAGCCTTTACGACTCGCGTGGAAGGTAATA
CCTTTATTCTTAAAATTAACTCGGCAACTCCTGTAGCCATAGCTCAACCTGTGCAGCAACAGTCAGCTCAGGGTATCAGT
AATATTGGTTTCCAGCGCGGTGCGCAAGGTGAAGGCCAGGTCGTTATTGATCTGCTAGGAAATAATACTCCTGTTGATGT
ACAGCAGCAGGGTACCAAGGTTATTGTGCGCACTTTAGGTTCCAAGATTCCGGCTCATTTGACCCGTCGTCTAAATGTAA
ATGATTTTGCTACACCAGTTTCCAGTGTCGATGCCGTGAATCAAAATGGTTCTGGCGTGATTAAGATTCAGTCTGCGGAA
AGTTATGAATATATGGCTTACCAGACTGATAACAAGCTGACCATCAGTTTGAAACGTCCGGAAGCCAAGAGCCCATTACG
TCCTAAAACAGTTGCTTATTCGGGTAAGAAAATTTCTTTAGATTTCCAGGATATTGAAGTCCGTCGTGTTTTACAGCTCT
TGGCCGATTTTACCGATATCAATATGGTGGCCGCAGACAGTGTACAAGGCAATATTACTTTGCGCTTAAAAGAAGTGCCA
TGGGATCAGGCGCTGGATATCGTACTGAAAACCAAAAATCTGGATAAACGCCGCAATGGTAATGTGATCTGGATAGCACC
AGTTGCAGAACTGATCAAGGCTGAAGAAGAAGAAGCTAAGGCTATTAAGCAGAGTGTTGCACTTGCTCCGATCCAAACTG
AATATATGCAGCTGAGTTATGCTAAAGCCGCTGATATTGAGAAACTGATTACGCAGAATAAATCTGCACAGAACTCAAGT
AATTCATCAAATAGTTCTTCTAATACTACTAATAATGATGATAAAGAAAGCCTTTTGAGTTCTCGTGGTTCTGTATCTAT
CGATGCGCGTACTAACACATTAATTGTGAATGACACCCAGCCATTTATTGATAAAATCCGTAATATGGTGGATCTGCTTG
ATGTACAGGTCAAGCAAGTGATGGTTGAAGCTCGTGTTGTTCGTGCATCTACTGAATTTGCGAAAGAAATGGGCGTGAAA
TGGGGAATCTTATCTCAAGGTATTACCAACAATGATCATTTACTTGTTGGTGGTAGCGATACCACACTTTGGGATTTAAG
AACACCTGAAATCGATAGTACTACAGGAATACCAGAGTATGAAATTCAACGTCCAGATAATTTGAATGTTGATTTAGGAG
TAGAAAATGCAGCCGGACGTATTGCTTTTGGTTTAATTAGTTTATCTGATTTCATGCTTGATCTTGAATTATCAGCGCTA
CAAGCGGATGGTTATGGTGAAGTCATTTCTACGCCTAAAGTTCTGACTGCGGACAAACAAAAAGCAACTGTTGAGTCTGG
ATTGGAAGTCCCATATCAATCAACTGAGGGTAGTGGTGCAAGTGCAACAGCAACGACTGAATTTAAAGATGTGGTACTTA
AACTGGATGTAACTCCAAGTATTACACCAGACGGTAAAGTGCAAATGGCATTGGATATTTCTAGTGACAGTATTGCGGGT
GTAACACCGATGGGTGAGTATTATTTAAATAAGAATCGGTTAAATACGAATGTCTTGGTTGAAAATGGTGAAACAGTCGT
GCTTGGTGGAATTTTTGAACAAGAGACCCTGAATAACCAAACTAAAGTACCATTCTTGGGAGACATTCCTTATTTAGGCC
GTTTATTCCGTAAAGATGTAAAAACAGATAATAAGCGCGAGTTACTGATTTTCGTTACACCTCGAATTGTTAATGACAGT
GTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(305-347)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-459)

Bacterial type II and III secretion system protein (Secretin)

(559-717)

AMIN domain (AMIN)

(55-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

74.931

99.586

0.746
  pilQ Acinetobacter baumannii strain A118

74.792

99.586

0.745
  comQ Acinetobacter baylyi ADP1

70.014

98.897

0.692
  pilQ Pseudomonas aeruginosa PAK

40.398

96.966

0.392