Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ABEKA_RS06160 Genome accession   NZ_CP080636
Coordinates   1004257..1005411 (-) Length   384 a.a.
NCBI ID   WP_138742548.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain EK30A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 999257..1010411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEKA_RS06135 (ABEKA_0971) - 999440..1000042 (-) 603 WP_138742553.1 hypothetical protein -
  ABEKA_RS06140 (ABEKA_0972) - 1000373..1000918 (-) 546 WP_005249624.1 glutathione peroxidase -
  ABEKA_RS06145 (ABEKA_0973) - 1001109..1002005 (+) 897 WP_138742551.1 DMT family transporter -
  ABEKA_RS06150 (ABEKA_0974) - 1002450..1003019 (-) 570 WP_138742550.1 Sua5/YciO/YrdC/YwlC family protein -
  ABEKA_RS06155 (ABEKA_0975) dprA 1003061..1004200 (-) 1140 WP_222110671.1 DNA-processing protein DprA Machinery gene
  ABEKA_RS06160 (ABEKA_0976) tsaP 1004257..1005411 (-) 1155 WP_138742548.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABEKA_RS06165 (ABEKA_0977) def 1005532..1006062 (+) 531 WP_004644875.1 peptide deformylase -
  ABEKA_RS06170 (ABEKA_0978) - 1006155..1006565 (+) 411 WP_004644876.1 DUF2946 family protein -
  ABEKA_RS06175 (ABEKA_0979) - 1006638..1008653 (+) 2016 WP_138742547.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42146.39 Da        Isoelectric Point: 9.0687

>NTDB_id=594616 ABEKA_RS06160 WP_138742548.1 1004257..1005411(-) (tsaP) [Acinetobacter lwoffii strain EK30A]
MKKVLKGMPFFSALGFKNQMLALAVCVGVSMGTIHSAEAAPARNVNPPALKANAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCEGIISRYLGSTSLQPQIRVESLNNTIPVIPLEHIKQWLE
RYTLLAPDSVQGTPYILGTADQRVLAGKGQKVYARGHGLVVGQRYAVYREAEPYVFTDANGKKYTAALELQQVASGIAVR
GEGDVTTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPTNAENIAAGGQIVRVLGSIGTAARHSVVTIDRGTAHGVQTGH
VFSVNQKGEVVTDPKTKERVQLPGERIGQIMVFKNFDQLSYAYVLESELPIKVGAGIQAPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=594616 ABEKA_RS06160 WP_138742548.1 1004257..1005411(-) (tsaP) [Acinetobacter lwoffii strain EK30A]
ATGAAAAAGGTTTTGAAGGGCATGCCATTTTTTAGTGCCTTGGGGTTTAAAAATCAGATGCTGGCACTTGCAGTTTGTGT
AGGCGTCAGTATGGGGACCATTCATTCTGCCGAGGCAGCACCTGCACGCAACGTCAATCCACCGGCATTAAAAGCTAATG
CACCGAACGTTTATGTGGTGAAAAAAGGCGATACGCTTTGGGATATCTCGAAACGCTTCCTGAAAAATCCGGTCCGTTGG
CCGGAAATCTGGGCCAGTAATAAGCACGTGAAAAATCCACATTGGATTTTCCCGGGTGACCGCCTGCTGATGTGTGATTA
CCAAGGCCGTCCGATTATTGGTAAAGACGAAGGTGATGGTTGTGAAGGTATTATCAGCCGCTATCTTGGCAGTACTTCTC
TGCAACCCCAGATTCGTGTTGAATCTTTAAATAATACGATTCCAGTGATTCCGCTTGAGCATATCAAGCAGTGGTTGGAA
CGCTATACCCTTCTGGCGCCTGATTCAGTTCAGGGCACACCCTACATTCTCGGAACTGCAGATCAGCGCGTACTGGCTGG
CAAAGGCCAGAAAGTTTATGCACGTGGTCACGGTCTGGTAGTGGGTCAACGCTATGCCGTTTATCGTGAAGCTGAACCGT
ATGTATTTACCGATGCAAACGGCAAGAAATATACTGCTGCACTTGAGCTGCAACAGGTGGCATCTGGTATTGCAGTTCGT
GGCGAAGGTGATGTCACCACACTTGAACTGACAGATAGTTACAATGCTGAAGTACGTCGCGGTGATCGTGTCTTACCAGA
ATACGATCCAATGTTACCGACTCTGTTCTATCCGACCAATGCAGAAAATATTGCTGCCGGTGGCCAGATTGTGCGTGTAT
TGGGGTCAATTGGTACAGCAGCACGTCATAGTGTTGTCACCATTGACCGTGGTACGGCACATGGAGTTCAGACGGGTCAT
GTCTTTAGTGTGAATCAAAAAGGTGAAGTGGTCACTGATCCTAAAACTAAAGAACGTGTGCAATTGCCAGGTGAGCGTAT
TGGCCAAATCATGGTATTCAAAAACTTCGATCAATTAAGCTATGCCTATGTGCTAGAGAGCGAATTACCAATCAAGGTTG
GTGCAGGAATTCAAGCACCTCTTTTAGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

67.792

100

0.68