Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ABEKA_RS04190 Genome accession   NZ_CP080636
Coordinates   575529..575855 (-) Length   108 a.a.
NCBI ID   WP_026055760.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain EK30A     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 570529..580855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEKA_RS04170 (ABEKA_0560) - 570723..571382 (-) 660 WP_004729299.1 FHA domain-containing protein -
  ABEKA_RS04175 (ABEKA_0561) gspD 571445..573709 (-) 2265 WP_005102817.1 type II secretion system secretin GspD -
  ABEKA_RS04180 (ABEKA_0562) - 573748..574602 (-) 855 WP_005250460.1 type II secretion system protein N -
  ABEKA_RS04185 (ABEKA_0563) gspN 574602..575345 (-) 744 WP_005250453.1 type II secretion system protein N -
  ABEKA_RS04190 (ABEKA_0564) hns 575529..575855 (-) 327 WP_026055760.1 H-NS histone family protein Regulator
  ABEKA_RS04195 (ABEKA_0565) - 575997..576425 (-) 429 WP_086044203.1 thioesterase family protein -
  ABEKA_RS04200 (ABEKA_0566) - 576434..577627 (-) 1194 WP_222110600.1 heme biosynthesis protein HemY -
  ABEKA_RS04205 (ABEKA_0567) - 577634..578473 (-) 840 WP_005105429.1 hypothetical protein -
  ABEKA_RS04210 (ABEKA_0568) - 578470..579249 (-) 780 WP_005105426.1 uroporphyrinogen-III synthase -
  ABEKA_RS04215 (ABEKA_0569) hemC 579249..580172 (-) 924 WP_004647306.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12318.07 Da        Isoelectric Point: 7.0196

>NTDB_id=594612 ABEKA_RS04190 WP_026055760.1 575529..575855(-) (hns) [Acinetobacter lwoffii strain EK30A]
MMPDITHLSVEELKRLQAEAESLIASKKDQEIEDAYQQILAVAEKVGMTVEQLLEFGASKRKKSSRKSVEPRYRSKSNPD
DTWTGRGKQPRWLVAELEKGAKLDDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=594612 ABEKA_RS04190 WP_026055760.1 575529..575855(-) (hns) [Acinetobacter lwoffii strain EK30A]
ATTATGCCAGATATTACGCATTTATCAGTAGAAGAGTTAAAACGTTTACAAGCAGAAGCAGAATCGCTGATTGCTTCAAA
AAAAGATCAAGAAATTGAAGACGCTTATCAGCAAATCTTGGCAGTTGCTGAGAAAGTGGGTATGACGGTTGAACAGTTAC
TTGAATTTGGTGCATCTAAGCGTAAGAAATCGTCACGTAAGTCGGTTGAACCGCGTTACCGTAGCAAAAGCAATCCGGAC
GATACCTGGACTGGCCGTGGTAAACAGCCGCGCTGGTTGGTGGCTGAATTGGAAAAAGGCGCAAAGCTGGACGATTTCCT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

78.704

100

0.787