Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ABEKA_RS03905 Genome accession   NZ_CP080636
Coordinates   506227..508449 (+) Length   740 a.a.
NCBI ID   WP_222110590.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain EK30A     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 501227..513449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEKA_RS03885 (ABEKA_0502) lnt 502024..503583 (+) 1560 WP_164543226.1 apolipoprotein N-acyltransferase -
  ABEKA_RS03890 (ABEKA_0503) - 503737..504072 (-) 336 WP_164543225.1 hypothetical protein -
  ABEKA_RS03895 (ABEKA_0504) gspG 504357..504791 (-) 435 WP_004278567.1 type II secretion system major pseudopilin GspG -
  ABEKA_RS03900 (ABEKA_0505) gspF 504871..506076 (-) 1206 WP_222110589.1 type II secretion system inner membrane protein GspF -
  ABEKA_RS03905 (ABEKA_0506) priA 506227..508449 (+) 2223 WP_222110590.1 primosomal protein N' Machinery gene
  ABEKA_RS03910 (ABEKA_0507) - 508525..510378 (+) 1854 WP_222110591.1 cation:proton antiporter -
  ABEKA_RS03915 (ABEKA_0508) - 510429..511304 (+) 876 WP_222110592.1 Hsp33 family molecular chaperone HslO -
  ABEKA_RS03920 (ABEKA_0509) - 511626..512087 (+) 462 WP_222110593.1 DUF2147 domain-containing protein -
  ABEKA_RS03925 (ABEKA_0510) - 512572..512901 (+) 330 WP_004278573.1 chaperone modulator CbpM -
  ABEKA_RS03930 (ABEKA_0511) - 512991..513254 (+) 264 WP_004729352.1 DUF465 domain-containing protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84114.20 Da        Isoelectric Point: 8.7337

>NTDB_id=594611 ABEKA_RS03905 WP_222110590.1 506227..508449(+) (priA) [Acinetobacter lwoffii strain EK30A]
MQNSHTDLSPIYRVRVAVPVHVFDCFDYTMSAEQFKQAQIGARVMVSFGRQNLVGVIIEKLPADTPLDPRFKLKAVTELL
DERAIIDAKVLSLLTWSAQYYQFPIGEVVHSALPTLLRQGKPYNLLARTWKLLDPDAEAKVRRSDKQQEAYRILKLHPVG
TTENVLNMAGIETATLKALEKKEICACVLEPQDFSPQPMQLAQMPLTANPEQKHAVEQVLKYRNQYQAFLLDGLTGSGKT
EVYLQIMEQVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQSAETGKASIVLGTRSAIYTPM
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRGHLQQCPVILGSATPSIDSYALVQHGKMQALELNQRAGTALMPKIHI
LDLKVAQKKHGISLQLIQDIKKRLEKKEQVLIFLNRRGYAPVLLCGSCGWQAQCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPEHCPQCQHQELVTLGMGTGKVEEHLNELFPDFEVIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHALLNTLVNENYRVFAQQTLKERQMARM
PPYRYAILIRCESKDQAQNTEFLQKHAAALRQYPDLALDIWGPIPAPMERKAGRYQSHMVLLSADRPRLHYYVRSWWQNM
LQDKPSSMKLTLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=594611 ABEKA_RS03905 WP_222110590.1 506227..508449(+) (priA) [Acinetobacter lwoffii strain EK30A]
ATGCAAAATTCCCACACCGATTTAAGTCCAATTTATCGCGTACGCGTTGCTGTACCTGTGCATGTATTTGATTGTTTTGA
TTACACGATGAGTGCAGAACAATTTAAACAGGCGCAGATTGGCGCACGTGTAATGGTGTCATTTGGACGTCAGAACCTGG
TCGGGGTGATTATCGAAAAACTGCCTGCAGACACTCCTCTCGACCCACGCTTTAAGCTTAAGGCAGTAACCGAACTGCTC
GATGAACGCGCCATTATAGATGCCAAAGTTTTAAGTTTGTTGACATGGTCAGCGCAGTATTACCAGTTTCCGATCGGTGA
GGTCGTCCACAGTGCCCTGCCGACCCTGTTGCGTCAGGGTAAGCCTTATAACCTGCTGGCCCGTACCTGGAAATTGCTAG
ACCCTGATGCCGAGGCCAAAGTACGTCGTTCGGACAAGCAGCAGGAAGCCTACCGGATTTTAAAACTGCACCCGGTCGGG
ACTACTGAAAATGTGCTGAATATGGCCGGGATTGAAACCGCGACCTTAAAAGCACTGGAGAAAAAAGAGATTTGCGCCTG
TGTACTGGAGCCACAAGATTTCAGCCCACAGCCAATGCAATTGGCACAGATGCCGCTGACCGCCAATCCTGAACAAAAAC
ATGCTGTCGAACAAGTATTAAAATATCGCAATCAATATCAGGCTTTTTTACTGGATGGTCTGACCGGCAGCGGTAAAACT
GAAGTGTATTTGCAGATCATGGAACAGGTACTGAAACAGGGCAAACAGGTGCTGGTGCTGGTGCCGGAAATCGGCCTGAC
GCCGCAAACCATCAGCCGTTTTCAGTCCCGTTTTCATTGCCATATTGCGCTGCTGCATTCCGGGCTGAATGATTCCAAAC
GGCTACAAGCCTGGCAGTCGGCAGAAACTGGCAAAGCCTCAATTGTGCTTGGTACACGTTCCGCCATTTATACGCCAATG
CCGAATCTGGGCCTGATCATTCTGGATGAAGAACATGACCTGTCCTTTAAACAGCAGGAAGGCTTCCGCTATCATGCTCG
AGATGTCGCCCTGTACCGCGGCCATTTACAGCAATGTCCGGTAATATTAGGTTCAGCCACACCAAGTATTGACAGTTATG
CGCTGGTGCAACATGGCAAGATGCAGGCACTGGAGCTAAACCAGCGTGCCGGCACGGCCTTGATGCCCAAAATCCATATT
CTGGATTTAAAAGTTGCGCAAAAAAAGCATGGGATTAGCCTGCAATTGATTCAGGACATCAAAAAGCGTCTGGAGAAAAA
AGAACAGGTGCTGATTTTTTTAAACCGCCGTGGCTATGCCCCCGTCTTGCTTTGTGGCAGCTGTGGCTGGCAGGCGCAAT
GTCCGCACTGTGATGCCAACTTCACTGTACACCGCCAGCCTTATCAGCATCTGCATTGCCATCACTGCGGTACTATTCAC
CGCATGCCGGAACACTGCCCGCAATGTCAGCATCAGGAACTGGTTACACTGGGTATGGGCACCGGCAAAGTCGAAGAACA
TCTGAATGAACTCTTTCCGGATTTTGAGGTGATTCGGGTCGATCGCGATTCCACCAGTCGGGTCGGCAGCTGGCAAAAAA
TTTATGACAAGATTCAGAAAAGCGAACCTGCCATTTTGCTCGGCACCCAGATGCTGGCCAAGGGACACCATTTTCCTTAT
GTCACTCTGGTGGCGATTCTGGATATCGATTCCGGTCTGCTCAGTGTGGATTTCCGTGCTACTGAACGGACTGCACAACT
GATTGTGCAGGTGGCAGGCCGCGCAGGCCGTGGTGAACATAAGGGTGATGTTTACCTACAGACCCTCAGACCTGATCATG
CCCTGCTGAATACCCTGGTCAATGAAAATTATCGCGTATTTGCCCAGCAAACCTTAAAAGAACGGCAGATGGCCAGAATG
CCGCCCTACCGTTATGCCATCCTGATTCGCTGTGAATCCAAGGATCAGGCACAAAATACCGAATTCTTACAGAAACATGC
GGCCGCACTCAGGCAATATCCTGATCTGGCGCTGGACATCTGGGGACCGATTCCTGCGCCGATGGAACGTAAGGCTGGGC
GCTATCAGTCGCATATGGTGCTTTTGTCAGCGGATCGTCCACGTTTGCATTACTATGTGCGTAGCTGGTGGCAAAACATG
CTGCAGGACAAACCTTCTAGCATGAAGCTCACGCTGGACATCGACCCTCAGGAACTGAGCTAA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(209-369)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.117

99.189

0.705