Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   K3G24_RS01680 Genome accession   NZ_CP080630
Coordinates   352519..353958 (+) Length   479 a.a.
NCBI ID   WP_005336331.1    Uniprot ID   A0A0T6N7F3
Organism   Aeromonas veronii strain A29V     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 347519..358958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3G24_RS01650 (K3G24_01645) mlaF 348096..348896 (-) 801 WP_005336343.1 phospholipid ABC transporter ATP-binding protein MlaF -
  K3G24_RS01655 (K3G24_01650) - 349104..350099 (+) 996 WP_058057518.1 KpsF/GutQ family sugar-phosphate isomerase -
  K3G24_RS01660 (K3G24_01655) kdsC 350099..350653 (+) 555 WP_107684358.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  K3G24_RS01665 (K3G24_01660) lptC 350650..351210 (+) 561 WP_047438732.1 LPS export ABC transporter periplasmic protein LptC -
  K3G24_RS01670 (K3G24_01665) lptA 351197..351724 (+) 528 WP_040068817.1 lipopolysaccharide transport periplasmic protein LptA -
  K3G24_RS01675 (K3G24_01670) lptB 351728..352453 (+) 726 WP_005336333.1 LPS export ABC transporter ATP-binding protein -
  K3G24_RS01680 (K3G24_01675) rpoN/rpoN1 352519..353958 (+) 1440 WP_005336331.1 RNA polymerase factor sigma-54 Machinery gene
  K3G24_RS01685 (K3G24_01680) hpf 353979..354266 (+) 288 WP_005336323.1 ribosome hibernation promoting factor -
  K3G24_RS01690 (K3G24_01685) ptsN 354269..354715 (+) 447 WP_107684357.1 PTS IIA-like nitrogen regulatory protein PtsN -
  K3G24_RS01695 (K3G24_01690) rapZ 354761..355627 (+) 867 WP_021231839.1 RNase adapter RapZ -
  K3G24_RS01700 (K3G24_01695) npr 355648..355920 (+) 273 WP_005336318.1 PTS phosphocarrier protein NPr -
  K3G24_RS01705 (K3G24_01700) - 355938..357842 (-) 1905 WP_118854500.1 BglG family transcription antiterminator -
  K3G24_RS01710 (K3G24_01705) dagF 357950..358690 (-) 741 WP_107684355.1 2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53701.64 Da        Isoelectric Point: 4.3442

>NTDB_id=594556 K3G24_RS01680 WP_005336331.1 352519..353958(+) (rpoN/rpoN1) [Aeromonas veronii strain A29V]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALENNPLLEQEESEAQETSPEAPVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVALED
IQAAVTSDDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVILEHMELLGNRDYRTLARK
TKLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=594556 K3G24_RS01680 WP_005336331.1 352519..353958(+) (rpoN/rpoN1) [Aeromonas veronii strain A29V]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAACCCTCTGCTGGAGCAGGAAGAGAGCGAGG
CGCAAGAGACCAGTCCGGAAGCGCCGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCCCAAGAGCAGATGCCG
GATGAGTTGCCGGTGGATACCACCTGGGACGAGGTTTACTCTGCCGGCACCGCCCAGAGCGCGGGCCCCATCCACGATGG
GGAAGATAGCGTCTATCAGGGAGAGACCACCGAAAACCTGCAGGATTATCTGTTGTGGCAGATGCGGCTCACACCGTTCA
GCGATGTGGATGCCGCCATCGCGCTCGCCATCATCGATGCCATCGACGAATCCGGTTATCTGACCGTTGCGCTGGAGGAT
ATCCAGGCTGCCGTCACCAGCGATGACGTAGAGGTGGAACTCGATGAGGTCGAGGCGGTACTCAAGCGGGTGCAGCACTT
CGATCCGGTCGGCATTGCTGCCCGTTCGGTGCAGGAGTGTTTGCTGATCCAGCTGGATCAATATGACCCGCAGACCCCCT
GGCTCAACGAGGCCAAGGAGGTGATCCTCGAGCACATGGAGCTGCTCGGCAACCGGGATTACCGCACCCTCGCCCGCAAG
ACAAAACTCAAGGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTGCTGGAGCCGCGCCCCGGCAACGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCCGACGTCTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTCGAGCTCAATCCCG
ATTCCGCCCCGCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGCAACGCCCGCAGCAGCACGGATACCCAATTC
ATCCGCTCCCACCTGCAGGAGGCCAAGTGGTTCATCAAGAGCCTTGAGAGCCGCAACGATACCCTGTTGAAAGTAGCCAG
CTGTATTGTCGAGCAGCAGCAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAATGACATCGCCG
AAGCGGTAGAGATGCATGAGTCGACCATCTCCCGGGTGACGACCCAGAAGTACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCAGAGAATCCTGCCAAGCCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6N7F3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.988

100

0.491