Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | K3G18_RS12690 | Genome accession | NZ_CP080629 |
| Coordinates | 2480924..2481334 (-) | Length | 136 a.a. |
| NCBI ID | WP_009967785.1 | Uniprot ID | A0A6I4D881 |
| Organism | Bacillus subtilis strain YPS-32 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2476315..2527775 | 2480924..2481334 | within | 0 |
Gene organization within MGE regions
Location: 2476315..2527775
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K3G18_RS12665 (K3G18_12665) | yqeF | 2476482..2477213 (-) | 732 | WP_032722145.1 | SGNH/GDSL hydrolase family protein | - |
| K3G18_RS12670 (K3G18_12670) | cwlH | 2477465..2478217 (-) | 753 | WP_032722147.1 | N-acetylmuramoyl-L-alanine amidase CwlH | - |
| K3G18_RS12675 (K3G18_12675) | yqeD | 2478404..2479030 (+) | 627 | WP_015714297.1 | TVP38/TMEM64 family protein | - |
| K3G18_RS12680 (K3G18_12680) | gnd | 2479049..2479917 (-) | 869 | Protein_2459 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| K3G18_RS12685 (K3G18_12685) | yqeB | 2480169..2480891 (+) | 723 | WP_010886572.1 | hypothetical protein | - |
| K3G18_RS12690 (K3G18_12690) | nucA/comI | 2480924..2481334 (-) | 411 | WP_009967785.1 | sporulation-specific Dnase NucB | Machinery gene |
| K3G18_RS12695 (K3G18_12695) | - | 2481530..2481880 (+) | 351 | Protein_2462 | sigma-70 family RNA polymerase sigma factor | - |
| K3G18_RS12700 (K3G18_12700) | spoIVCA | 2481908..2483368 (-) | 1461 | WP_223257626.1 | site-specific DNA recombinase SpoIVCA | - |
| K3G18_RS21190 | - | 2483326..2483504 (-) | 179 | Protein_2464 | hypothetical protein | - |
| K3G18_RS12705 (K3G18_12705) | arsC | 2483859..2484278 (-) | 420 | WP_004398596.1 | thioredoxin-dependent arsenate reductase | - |
| K3G18_RS12710 (K3G18_12710) | acr3 | 2484290..2485330 (-) | 1041 | WP_032722149.1 | arsenite efflux transporter Acr3 | - |
| K3G18_RS12715 (K3G18_12715) | arsK | 2485353..2485793 (-) | 441 | WP_032722151.1 | ArsI/CadI family heavy metal resistance metalloenzyme | - |
| K3G18_RS12720 (K3G18_12720) | arsR | 2485852..2486169 (-) | 318 | WP_029318103.1 | arsenical resistance operon transcriptional regulator ArsR | - |
| K3G18_RS12725 (K3G18_12725) | yqcI | 2486541..2487305 (-) | 765 | WP_017696291.1 | YqcI/YcgG family protein | - |
| K3G18_RS12730 (K3G18_12730) | rapE | 2487748..2488875 (+) | 1128 | WP_220562262.1 | response regulator aspartate phosphatase RapE | - |
| K3G18_RS12735 (K3G18_12735) | phrE | 2488865..2488999 (+) | 135 | WP_004398770.1 | phosphatase RapE inhibitor PhrE | - |
| K3G18_RS12740 (K3G18_12740) | - | 2489109..2489267 (+) | 159 | WP_003245945.1 | hypothetical protein | - |
| K3G18_RS12745 (K3G18_12745) | yqcG | 2489637..2491232 (+) | 1596 | WP_004399034.1 | LXG family T7SS effector endonuclease toxin YqcG | - |
| K3G18_RS12750 (K3G18_12750) | yqcF | 2491247..2491825 (+) | 579 | WP_009967790.1 | type VII secretion system immunity protein YqcF | - |
| K3G18_RS12755 (K3G18_12755) | - | 2491943..2492089 (+) | 147 | WP_009967791.1 | hypothetical protein | - |
| K3G18_RS12760 (K3G18_12760) | - | 2492086..2492448 (-) | 363 | WP_003229947.1 | hypothetical protein | - |
| K3G18_RS12765 (K3G18_12765) | - | 2492464..2492943 (-) | 480 | WP_004399085.1 | hypothetical protein | - |
| K3G18_RS12770 (K3G18_12770) | cwlA | 2493108..2493926 (-) | 819 | WP_017697459.1 | N-acetylmuramoyl-L-alanine amidase CwlA | - |
| K3G18_RS12775 (K3G18_12775) | skhD | 2493971..2494393 (-) | 423 | WP_017697460.1 | holin family protein | - |
| K3G18_RS12780 (K3G18_12780) | xepAK | 2494439..2495332 (-) | 894 | WP_032722160.1 | hypothetical protein | - |
| K3G18_RS12785 (K3G18_12785) | yqcE | 2495420..2495584 (-) | 165 | WP_003229944.1 | XkdX family protein | - |
| K3G18_RS12790 (K3G18_12790) | yqcD | 2495581..2495916 (-) | 336 | WP_009967793.1 | XkdW family protein | - |
| K3G18_RS12795 (K3G18_12795) | yqcC | 2495926..2497026 (-) | 1101 | WP_032722161.1 | pyocin knob domain-containing protein | - |
| K3G18_RS12800 (K3G18_12800) | - | 2497030..2497302 (-) | 273 | WP_032722163.1 | hypothetical protein | - |
| K3G18_RS12805 (K3G18_12805) | yqcA | 2497299..2497877 (-) | 579 | WP_032722164.1 | YmfQ family protein | - |
| K3G18_RS12810 (K3G18_12810) | yqbT | 2497861..2498907 (-) | 1047 | WP_032722165.1 | baseplate J/gp47 family protein | - |
| K3G18_RS12815 (K3G18_12815) | yqbS | 2498900..2499325 (-) | 426 | WP_032722166.1 | DUF2634 domain-containing protein | - |
| K3G18_RS12820 (K3G18_12820) | yqbR | 2499338..2499604 (-) | 267 | WP_032722167.1 | DUF2577 family protein | - |
| K3G18_RS12825 (K3G18_12825) | yqbQ | 2499601..2500581 (-) | 981 | WP_032722168.1 | hypothetical protein | - |
| K3G18_RS12830 (K3G18_12830) | yqbP | 2500594..2501253 (-) | 660 | WP_032722169.1 | LysM peptidoglycan-binding domain-containing protein | - |
| K3G18_RS12835 (K3G18_12835) | yqbO | 2501246..2506003 (-) | 4758 | WP_032722170.1 | phage tail tape measure protein | - |
| K3G18_RS12840 (K3G18_12840) | - | 2506006..2506143 (-) | 138 | WP_021480099.1 | hypothetical protein | - |
| K3G18_RS12845 (K3G18_12845) | - | 2506185..2506634 (-) | 450 | WP_032722171.1 | phage tail assembly chaperone | - |
| K3G18_RS12850 (K3G18_12850) | txpA | 2506780..2506959 (+) | 180 | WP_004398662.1 | type I toxin-antitoxin system toxin TxpA | - |
| K3G18_RS12855 (K3G18_12855) | bsrH | 2507331..2507420 (+) | 90 | WP_075058862.1 | type I toxin-antitoxin system toxin BsrH | - |
| K3G18_RS12860 (K3G18_12860) | yqbM | 2507674..2508117 (-) | 444 | WP_003229930.1 | phage tail tube protein | - |
| K3G18_RS12865 (K3G18_12865) | yqbK | 2508120..2509520 (-) | 1401 | WP_003229929.1 | phage tail sheath family protein | - |
| K3G18_RS12870 (K3G18_12870) | - | 2509521..2509712 (-) | 192 | WP_010886574.1 | hypothetical protein | - |
| K3G18_RS12875 (K3G18_12875) | yqbJ | 2509709..2510146 (-) | 438 | WP_003229927.1 | DUF6838 family protein | - |
| K3G18_RS12880 (K3G18_12880) | yqbI | 2510159..2510662 (-) | 504 | WP_003246050.1 | HK97 gp10 family phage protein | - |
| K3G18_RS12885 (K3G18_12885) | yqbH | 2510659..2511021 (-) | 363 | WP_003229925.1 | YqbH/XkdH family protein | - |
| K3G18_RS12890 (K3G18_12890) | gkpG | 2511018..2511413 (-) | 396 | WP_004398566.1 | DUF3199 family protein | - |
| K3G18_RS12895 (K3G18_12895) | yqbF | 2511417..2511728 (-) | 312 | WP_003229923.1 | YqbF domain-containing protein | - |
| K3G18_RS12900 (K3G18_12900) | skdG | 2511739..2512674 (-) | 936 | WP_003229922.1 | phage major capsid protein | - |
| K3G18_RS12905 (K3G18_12905) | yqbD | 2512693..2513661 (-) | 969 | WP_003229921.1 | XkdF-like putative serine protease domain-containing protein | - |
| K3G18_RS12910 (K3G18_12910) | - | 2513694..2514347 (-) | 654 | WP_003229920.1 | hypothetical protein | - |
| K3G18_RS12915 (K3G18_12915) | yqbB | 2514388..2515305 (-) | 918 | WP_004398748.1 | phage head morphogenesis protein | - |
| K3G18_RS12920 (K3G18_12920) | yqbA | 2515302..2516834 (-) | 1533 | WP_015714324.1 | phage portal protein | - |
| K3G18_RS12925 (K3G18_12925) | stmB | 2516838..2518133 (-) | 1296 | WP_015714325.1 | PBSX family phage terminase large subunit | - |
| K3G18_RS12930 (K3G18_12930) | terS | 2518126..2518845 (-) | 720 | WP_048655095.1 | phage terminase small subunit | - |
| K3G18_RS12935 (K3G18_12935) | - | 2518913..2519377 (-) | 465 | WP_004398685.1 | hypothetical protein | - |
| K3G18_RS12940 (K3G18_12940) | yqaQ | 2519521..2519976 (-) | 456 | WP_004398775.1 | hypothetical protein | - |
| K3G18_RS12945 (K3G18_12945) | - | 2520174..2521103 (+) | 930 | WP_003229913.1 | hypothetical protein | - |
| K3G18_RS12950 (K3G18_12950) | yqaO | 2521177..2521383 (-) | 207 | WP_003229912.1 | XtrA/YqaO family protein | - |
| K3G18_RS12955 (K3G18_12955) | yqaN | 2521465..2521893 (-) | 429 | WP_009967809.1 | RusA family crossover junction endodeoxyribonuclease | - |
| K3G18_RS12960 (K3G18_12960) | - | 2521989..2522138 (-) | 150 | WP_003229910.1 | hypothetical protein | - |
| K3G18_RS12965 (K3G18_12965) | sknM | 2522129..2523070 (-) | 942 | WP_075058863.1 | ATP-binding protein | - |
| K3G18_RS12970 (K3G18_12970) | yqaL | 2522952..2523629 (-) | 678 | WP_116362964.1 | DnaD domain-containing protein | - |
| K3G18_RS12975 (K3G18_12975) | recT | 2523705..2524559 (-) | 855 | WP_003229907.1 | recombinase RecT | - |
| K3G18_RS12980 (K3G18_12980) | yqaJ | 2524562..2525521 (-) | 960 | WP_004398673.1 | YqaJ viral recombinase family protein | - |
| K3G18_RS12985 (K3G18_12985) | - | 2525627..2525821 (-) | 195 | WP_003229905.1 | YqaI family protein | - |
| K3G18_RS12990 (K3G18_12990) | - | 2525781..2525954 (-) | 174 | WP_119123069.1 | hypothetical protein | - |
| K3G18_RS12995 (K3G18_12995) | sknH | 2525951..2526208 (-) | 258 | WP_003245994.1 | YqaH family protein | - |
| K3G18_RS13000 (K3G18_13000) | yqaG | 2526205..2526774 (-) | 570 | WP_004398626.1 | helix-turn-helix transcriptional regulator | - |
| K3G18_RS13005 (K3G18_13005) | - | 2526848..2526988 (-) | 141 | WP_003229902.1 | hypothetical protein | - |
| K3G18_RS13010 (K3G18_13010) | yqaF | 2527018..2527248 (-) | 231 | WP_004398958.1 | helix-turn-helix transcriptional regulator | - |
| K3G18_RS13015 (K3G18_13015) | sknR | 2527425..2527775 (+) | 351 | WP_004398704.1 | transcriptional regulator SknR | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14967.97 Da Isoelectric Point: 5.1853
>NTDB_id=594528 K3G18_RS12690 WP_009967785.1 2480924..2481334(-) (nucA/comI) [Bacillus subtilis strain YPS-32]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
Nucleotide
Download Length: 411 bp
>NTDB_id=594528 K3G18_RS12690 WP_009967785.1 2480924..2481334(-) (nucA/comI) [Bacillus subtilis strain YPS-32]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAGCAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGATAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACG
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCTGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAA
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAGCAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGATAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACG
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCTGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
62.609 |
84.559 |
0.529 |